PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017720
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 182aa    MW: 19395.6 Da    PI: 5.2333
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017720genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.7e-18959155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
               + y+GVr++  +g+Wv+eIr+p+    +  r++lg+f tae+Aa a++ a+++l+g
  Cla017720  9 PVYRGVRRRN-TGKWVSEIREPR----KpNRIWLGTFPTAEMAAVAYDVAALALKG 59
               68*****887.9*********94....478***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-11959IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-311069IPR001471AP2/ERF domain
SMARTSM003801.8E-331073IPR001471AP2/ERF domain
PROSITE profilePS5103223.0371067IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-211069IPR016177DNA-binding domain
CDDcd000188.60E-301169No hitNo description
PRINTSPR003671.0E-81122IPR001471AP2/ERF domain
PRINTSPR003671.0E-83349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MASSSGRHPV YRGVRRRNTG KWVSEIREPR KPNRIWLGTF PTAEMAAVAY DVAALALKGQ  60
DAELNFPNSA SSLPIPASRS PSDIQAAAAS AAAALGAAAA AMEARNNNGS RRGTNSGDVV  120
YGGRYGQDGL GNQFMDEDLI FDMPNVLMNM AEGMLLSPPR FNIHGGEDDG DNGADQNLWN  180
FP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-168691274Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138009.11e-102PREDICTED: ethylene-responsive transcription factor ERF024-like
SwissprotQ9SJR02e-62ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A0A0LBA21e-101A0A0A0LBA2_CUCSA; Uncharacterized protein
STRINGXP_004167928.11e-102(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.15e-47ERF family protein