PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla017719 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | ERF | ||||||||
Protein Properties | Length: 203aa MW: 22728.8 Da PI: 5.7662 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.3 | 1.9e-13 | 35 | 84 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ykGVr++ +g+Wv+e+r p +k+ +f++g+f ++++Aa a++ +++++ge Cla017719 35 IYKGVRQR--NGKWVSELRRP---NKKSSFWVGTFCSPKMAAVAYDVVALAIRGE 84 69***975..6*********8...347*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.9E-8 | 34 | 84 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.53E-23 | 34 | 93 | No hit | No description |
PROSITE profile | PS51032 | 16.634 | 35 | 91 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-21 | 35 | 97 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-15 | 35 | 92 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-22 | 35 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-6 | 36 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-6 | 73 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MTSSSSSSTN EHFLSRAMVK RRAGRKKFQE TRHPIYKGVR QRNGKWVSEL RRPNKKSSFW 60 VGTFCSPKMA AVAYDVVALA IRGESATLNF PALAHSFPRV MLSSLSINDI RMMAVEAAEA 120 FTSSDILTSL SPSSSSPSLL CSSLMSEEKV VSDLFWDEEE VFNMPTIIAD MAEGLILTPP 180 GMKSEFDSED YENTFELSLW NYE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008442807.1 | 7e-95 | PREDICTED: dehydration-responsive element-binding protein 1F-like | ||||
TrEMBL | A0A1S3B6L0 | 2e-93 | A0A1S3B6L0_CUCME; dehydration-responsive element-binding protein 1F-like | ||||
STRING | XP_008442807.1 | 3e-94 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 7e-42 | C-repeat-binding factor 4 |