PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017716
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRF
Protein Properties Length: 440aa    MW: 47666.3 Da    PI: 9.0873
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017716genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC81.76.6e-26193237145
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e+
  Cla017716 193 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVET 237
                79****************************************996 PP
2QLQ43.31.1e-15119154237
        QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                +F+ aQ q+L+ Q+l+++y++a++ vPpeLl +i+k
  Cla017716 119 YFSVAQRQELELQALIFRYMLAGAAVPPELLHPIKK 154
                79********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.1E-6118154IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.611119154IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.7E-11120152IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.192193237IPR014977WRC domain
PfamPF088792.7E-22194236IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MANSLQRIWR HGCALRGTVA PLCRPFSTDS LVQVKPGEIG MVSGIPEEHL TRRRESEEQQ  60
HSAKISKLFV EQTHHLSSSS TSVLPLFVPA DSNNNSKTSN ILSAFQDSTS STLPRMLGYF  120
SVAQRQELEL QALIFRYMLA GAAVPPELLH PIKKSLISSS SSTPFFLHHP LQHFPHYPTS  180
LLQAGHWGRA AMDPEPGRCR RTDGKKWRCS RDVVAGQKYC ERHMHRGRNR SRKPVETTTT  240
NPSTTAAAVG GGPPPPPPPP LLAAVAAVVL SVPTPTVSCS NSLSENKKFY ESHKEPSAGD  300
AKSDGHILRH FFDDWPRSEN GGCGNDNNSV NQRMNSTSAS ATSLSISMPG NPPSSSSDVS  360
LKLSTGGSSD QGSDHHIHQN GNVDREHVQL NWAAGWAATQ MASMGGPLAE ALRSANNSLP  420
TSVLHQLQRT TNSEASFIST
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818411e-133LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132581e-133LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138010.20.0PREDICTED: growth-regulating factor 3-like
TrEMBLA0A0A0LEG10.0A0A0A0LEG1_CUCSA; Uncharacterized protein
STRINGXP_004138010.10.0(Cucumis sativus)
STRINGXP_004165500.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78953242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.12e-52growth-regulating factor 4