PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017611
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family M-type_MADS
Protein Properties Length: 391aa    MW: 43092.8 Da    PI: 4.3907
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017611genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.21.4e-101151343
               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
               i ++  r+ +f kRr g+lKK +EL +LC++ +  ++ +++
  Cla017611 11 IASDNARKASFKKRRLGLLKKVSELTTLCGVYAFAVVNGPD 51
               678889*************************9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-15160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.283147IPR002100Transcription factor, MADS-box
CDDcd002661.21E-25285No hitNo description
SuperFamilySSF554556.93E-19294IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-5323IPR002100Transcription factor, MADS-box
PfamPF003195.1E-121151IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MTRKKVKLVW IASDNARKAS FKKRRLGLLK KVSELTTLCG VYAFAVVNGP DDDHPVIWPS  60
LSAAQHLYRR FHSLPEVERQ KKMTNQETYL KERTTKAQDL LKKHIKKNQE LELDLLMHQL  120
QQGRQIYQLT NAELLGLFWM VEERIRDCRK RIEYHQQVHR LPPPTGFVPS NDPLLETGSN  180
EMDLIDNGRN LMDQWFIDMV MNSNDKIGGS SSSMAGELGF VQSQGNGGDL MNGGGNAMVE  240
VSDLGGTGTI IIDGDGEENN LLSDWNFGGN DDSGMSEIEK LVNDINGGGV NATACPMDLT  300
HQQGVFGIGG DGNGIDPMGS LYSDGGYCGG GGGIDVNDDA DMLLRGLFGS GISSNENGNE  360
NENQNGNEHE DEDEDDDDDP LSKEWPNNFI P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLVWIASDNARKASFKKRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442937.10.0PREDICTED: uncharacterized protein LOC103486691
TrEMBLA0A1S3B6W20.0A0A1S3B6W2_CUCME; uncharacterized protein LOC103486691
STRINGXP_008442937.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110141938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.18e-38AGAMOUS-like 48