PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cla017537 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 252aa MW: 26061.6 Da PI: 8.8242 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.5 | 4.1e-07 | 58 | 82 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C+ + Ck+Gd+C+FaHg+ Cla017537 58 SRMCNKYNSAEGCKFGDKCHFAHGE 82 567888888889***********96 PP | |||||||
2 | zf-CCCH | 36.9 | 6.3e-12 | 219 | 243 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC++fa+ G C +G+rC+FaHg Cla017537 219 FKTKLCDNFAK-GSCTFGERCHFAHG 243 69*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 8.286 | 1 | 19 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 1.1 | 6 | 16 | No hit | No description |
SuperFamily | SSF90229 | 7.46E-8 | 54 | 86 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-13 | 56 | 87 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.493 | 56 | 83 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.41 | 57 | 82 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-4 | 61 | 82 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 7.74E-16 | 115 | 195 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.1E-12 | 123 | 193 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 4.5E-17 | 123 | 192 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.844 | 124 | 188 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 8.31E-16 | 126 | 188 | No hit | No description |
Pfam | PF00013 | 3.3E-12 | 126 | 190 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 7.9E-16 | 216 | 249 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-8 | 218 | 248 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.164 | 218 | 245 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-7 | 218 | 244 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-9 | 219 | 243 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 252 aa Download sequence Send to blast |
ISTTGCPFGD GCHFLHYVPG GYNAVAQMMN LPPAPPAPRN MGAPAPMSNG SAMQVVKSRM 60 CNKYNSAEGC KFGDKCHFAH GEWELGKPSA PAHDDPRAIG HIPNRLSGRM DAAPPGPAAS 120 FGASATAKIS VDASLAGAII GKGGVNSKQI CRRTGAKLSI RDHESDPNLR NIELEGSFDQ 180 IKEASAMVRE LIVTVSMAGP PKSASGATGG IAAPAGSNFK TKLCDNFAKG SCTFGERCHF 240 AHGAAELRKS GA |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 0.0 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008443064.1 | 1e-172 | PREDICTED: zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 1e-101 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A1S3B785 | 1e-171 | A0A1S3B785_CUCME; zinc finger CCCH domain-containing protein 14-like | ||||
STRING | XP_008443064.1 | 1e-171 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1462 | 32 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06770.1 | 4e-59 | C3H family protein |