PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017518
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 370aa    MW: 40084.3 Da    PI: 9.5383
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017518genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.59.9e-13298343655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri +++ +L++l+P+     +k  + a++L +Av+YIk+Lq
  Cla017518 298 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKELQ 343
                689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.32292342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-16295352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.85E-12296345No hitNo description
Gene3DG3DSA:4.10.280.105.9E-15297353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-12298348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9298343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGSNTHQSFQ QPNSALLRFR SAPSSLFADF AQGIDSKRSN PFEGSESERL VSRFGNRGGG  60
GNSNDSESPA AGNYSSGLPP HYPRLSSAVN CSSSSSTTTS SSSSSSSSSS MCSSLGFLGP  120
NLVRQSSSPA GVFSQLNQNG YGGGSFSRLS VNNNGGEVSP SSNRLNSQIS FSSLLPSSLG  180
MFPQISEQVV GNEKLVNSNN GETQFFTPSG FPFASWNESS QFSETFPDIK REPDSNKKLF  240
SSSHQNGEIG NRVHLLSHHL SLPKNASDVA SIEKLLQLQD AVPCRIRAKR GCATHPRSIA  300
ERVRRTRISE RMRKLQDLVP NMDKQTNTAD MLDLAVDYIK ELQKQFKTLS DNRANCVCLN  360
MQKSVSNQIM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818411e-160LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132581e-160LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136581.10.0PREDICTED: transcription factor bHLH130
SwissprotQ66GR37e-93BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A0A0LH010.0A0A0A0LH01_CUCSA; Uncharacterized protein
STRINGXP_004136581.10.0(Cucumis sativus)
STRINGXP_004168456.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-89bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]