PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cla017511 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 161aa MW: 18212.8 Da PI: 6.7563 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 86.1 | 5.2e-27 | 62 | 150 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA+++GF +r+ + ++s+++g+i r++ C+keg+ + + k r++r++tr gCka+++vk +k+gkw++tk+++eHnH+l+ Cla017511 62 FYDKYARQLGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTREGCKAMIHVKYDKSGKWVITKFVKEHNHPLV 150 9**************************************999999989***************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.7E-25 | 62 | 150 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 161 aa Download sequence Send to blast |
MDLRDNSERC LLTVDADEGE EGIEGGSFES PAGTELIECD GDIILEPYEG MEFESEDAAK 60 IFYDKYARQL GFVMRVMSCR RSEKDGRILA RRLGCNKEGY CVSIRGKFGA VRKPRPSTRE 120 GCKAMIHVKY DKSGKWVITK FVKEHNHPLV VAPREARQTM A |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 0.0 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022154282.1 | 1e-115 | protein FAR1-RELATED SEQUENCE 5 | ||||
Swissprot | Q9SZL8 | 4e-26 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A1S3B7B4 | 1e-102 | A0A1S3B7B4_CUCME; protein FAR1-RELATED SEQUENCE 5 | ||||
STRING | XP_004136586.1 | 1e-104 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G43280.1 | 6e-77 | FAR1 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|