PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017504
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 340aa    MW: 38861.6 Da    PI: 5.2963
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017504genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.8e-194897255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+ +l+g
  Cla017504 48 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFSTAEEAAMAYDQAATRLYG 97
               69****999.**********965...5************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.27E-3047107No hitNo description
Gene3DG3DSA:3.30.730.104.2E-3048106IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-2148106IPR016177DNA-binding domain
PfamPF008474.0E-134897IPR001471AP2/ERF domain
PROSITE profilePS5103222.57648105IPR001471AP2/ERF domain
SMARTSM003801.0E-3748111IPR001471AP2/ERF domain
PRINTSPR003672.0E-104960IPR001471AP2/ERF domain
PRINTSPR003672.0E-107187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MENYRDNKKP HSSSSSASSS SSSSSSLHKP WKKGPSRGKG GPQNASCEYR GVRQRTWGKW  60
VAEIREPKKR TRLWLGSFST AEEAAMAYDQ AATRLYGPHA YLNLPHLANN NHHNNGSNSK  120
SNNFLKWVPS KNFISLFPHT NRAAMAATGS FMLNLNAQPS LHLIHQRLQQ LKPPHAFLSS  180
NSLLSPSKKL EDEGEKEKDD EALVREEKTT KTTDTRSMEE EKPQIDLNEF LQQLGILKEE  240
EEEEEKLVIE LGEERNNNDD DGGYCLGSSE SNNCDYSDEV EVLSDKSFNW DSIMEMDPNI  300
EYHHFGSFQV YDHYVNYEDD LSFPNSIWDF EEDHSTRIIH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-1949105360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652126.11e-175PREDICTED: dehydration-responsive element-binding protein 2F
TrEMBLA0A0A0LBF01e-174A0A0A0LBF0_CUCSA; Uncharacterized protein
STRINGXP_008443124.11e-161(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54773150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.12e-45ERF family protein