PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017497
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WOX
Protein Properties Length: 222aa    MW: 23343.1 Da    PI: 7.1941
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017497genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.64.2e-089403057
               HHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox 30 reeLAkkl....gLterqVkvWFqNrRakekk 57
                 ++ k l    ++ +++V++WFqNrR + ++
  Cla017497  9 TVRIRKLLekfgSVGDANVFYWFQNRRSRSRR 40
               5555555555578999*************997 PP

2Wus_type_Homeobox62.49.4e-211422465
  Wus_type_Homeobox 24 lrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +++P+k+e+ ri++ Le++G ++d+NVfyWFQNr++R+r++q
          Cla017497  1 MVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 42
                       78**************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500718.875141IPR001356Homeobox domain
SuperFamilySSF466891.49E-7348IPR009057Homeodomain-like
PfamPF000461.3E-5640IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-41847IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MVNPPKDETV RIRKLLEKFG SVGDANVFYW FQNRRSRSRR RQRQLQAAAT HQGSGGAIHY  60
DGGSVGGGGY NGGVMNFGGA SSSYLGGGGS SSSSSASGVG GDCSGGGGGG NFSMSGHMGF  120
SEVDQQMVVT TPSFCPSETS NLEFQSGYII IFINGVPTEV PKGPVDMKAM FGQETVLVHS  180
SGLPVLTNEF GISLHTLQHG ESYFLVIIIP HINFSLSLSL CF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818411e-109LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132581e-109LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136750.17e-88PREDICTED: WUSCHEL-related homeobox 11 isoform X1
SwissprotQ6X7J31e-47WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBLA0A0A0LC012e-86A0A0A0LC01_CUCSA; Uncharacterized protein
STRINGXP_004136750.13e-87(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58983152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.14e-27WUSCHEL related homeobox 11
Publications ? help Back to Top
  1. Hu X,Xu L
    Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis.
    Plant Physiol., 2016. 172(4): p. 2363-2373
    [PMID:27784768]
  2. Sheng L, et al.
    Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture.
    Development, 2017. 144(17): p. 3126-3133
    [PMID:28743799]
  3. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]
  4. Baesso B, et al.
    Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana.
    Plant Biol (Stuttg), 2018. 20(3): p. 426-432
    [PMID:29450949]