PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla017497 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | WOX | ||||||||
Protein Properties | Length: 222aa MW: 23343.1 Da PI: 7.1941 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.6 | 4.2e-08 | 9 | 40 | 30 | 57 |
HHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 30 reeLAkkl....gLterqVkvWFqNrRakekk 57 ++ k l ++ +++V++WFqNrR + ++ Cla017497 9 TVRIRKLLekfgSVGDANVFYWFQNRRSRSRR 40 5555555555578999*************997 PP | |||||||
2 | Wus_type_Homeobox | 62.4 | 9.4e-21 | 1 | 42 | 24 | 65 |
Wus_type_Homeobox 24 lrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++P+k+e+ ri++ Le++G ++d+NVfyWFQNr++R+r++q Cla017497 1 MVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 42 78**************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 8.875 | 1 | 41 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.49E-7 | 3 | 48 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.3E-5 | 6 | 40 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-4 | 18 | 47 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MVNPPKDETV RIRKLLEKFG SVGDANVFYW FQNRRSRSRR RQRQLQAAAT HQGSGGAIHY 60 DGGSVGGGGY NGGVMNFGGA SSSYLGGGGS SSSSSASGVG GDCSGGGGGG NFSMSGHMGF 120 SEVDQQMVVT TPSFCPSETS NLEFQSGYII IFINGVPTEV PKGPVDMKAM FGQETVLVHS 180 SGLPVLTNEF GISLHTLQHG ESYFLVIIIP HINFSLSLSL CF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 1e-109 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 1e-109 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004136750.1 | 7e-88 | PREDICTED: WUSCHEL-related homeobox 11 isoform X1 | ||||
Swissprot | Q6X7J3 | 1e-47 | WOX11_ARATH; WUSCHEL-related homeobox 11 | ||||
TrEMBL | A0A0A0LC01 | 2e-86 | A0A0A0LC01_CUCSA; Uncharacterized protein | ||||
STRING | XP_004136750.1 | 3e-87 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5898 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03660.1 | 4e-27 | WUSCHEL related homeobox 11 |
Publications ? help Back to Top | |||
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