PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017441
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family G2-like
Protein Properties Length: 283aa    MW: 30293.9 Da    PI: 7.0987
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017441genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.91.5e-3091144155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Cla017441  91 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 144
                59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.05988147IPR017930Myb domain
SuperFamilySSF466892.6E-2088148IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-3090149IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-2492144IPR006447Myb domain, plants
PfamPF002491.0E-794143IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MREDDSNWFS KWEQQLPSPD ELMPLSQTLI TPDLALAFDI TNSNPPINNN SHPPPPPPPP  60
PVLTQPSSAD FGDSGDLGSG AGDEPARTLK RPRLVWTPQL HKRFVDAVAH LGIKNAVPKT  120
IMQLMSVDGL TRENVASHLQ KYRLYLKRMQ GISGGSGGGA SAGGGLPSAA SDPATDHLFA  180
SSPVPAHFLH SARGNSDHFL PFVPIGALQH HHHQMAAAAQ YHRQVTQFGS PPNGQVEHPF  240
LARPVHRIGA PVSTPATNYS EDLDTGNGTG GRKVLTLFPT GND
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A6e-3391147157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136626.11e-154PREDICTED: transcription factor PCL1-like
SwissprotO222101e-63MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A0A0LC841e-152A0A0A0LC84_CUCSA; Uncharacterized protein
STRINGXP_004173600.11e-153(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85423045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.17e-75G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]