PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017389
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 297aa    MW: 33633.2 Da    PI: 4.7881
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017389genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.4e-1973121355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  Cla017389  73 YRGIRQRP-WGKWAAEIRDPRK---GIRVWLGTFNTAEEAARAYDREARKIRG 121
                9*******.**********954...3************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.27E-2272130IPR016177DNA-binding domain
PROSITE profilePS5103223.6772129IPR001471AP2/ERF domain
SMARTSM003806.1E-3872135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-3272130IPR001471AP2/ERF domain
PfamPF008471.3E-1173121IPR001471AP2/ERF domain
CDDcd000181.06E-3273130No hitNo description
PRINTSPR003671.0E-117384IPR001471AP2/ERF domain
PRINTSPR003671.0E-1195111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MCGGAIIADL IPRRDAQRVT ASDIWPNSNN TFFHFNKLPS HRDSTPLKRP LPSSEASSWT  60
DEKPKKRQRK NLYRGIRQRP WGKWAAEIRD PRKGIRVWLG TFNTAEEAAR AYDREARKIR  120
GKKAKVNFPN EDDEYSIQAP CNLQNAIPQF QPQFRADLYT VPENSGYGEF RYDLNQIGSQ  180
IPAAIEEQSG SGSENSYSPS ERLGFGQNMN AVEFGVKEVE DKPEQKVAVV AAAEEENEVE  240
KLSEELMAYE NFMKFYQIPY LDGQSTVTNP AEEQVVGDLW SFDDDDGLHG SVSSSEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-21731311574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022934248.11e-166ethylene-responsive transcription factor ERF071 isoform X1
TrEMBLA0A0A0KT751e-157A0A0A0KT75_CUCSA; Uncharacterized protein
STRINGXP_004152238.11e-158(Cucumis sativus)
STRINGXP_004156828.11e-158(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.13e-33ethylene-responsive element binding protein