PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017355
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 317aa    MW: 35609.6 Da    PI: 4.3804
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017355genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.9e-30108165359
                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d+++++itY+++Hnh+
  Cla017355 108 DFWSWRKYGQKPIKGSPYPRGYYRCSTTkGCSAKKQVERCKTDGSMFIITYTSSHNHP 165
                99***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-3196167IPR003657WRKY domain
SuperFamilySSF1182905.75E-26103167IPR003657WRKY domain
SMARTSM007741.0E-35106166IPR003657WRKY domain
PfamPF031062.5E-25108165IPR003657WRKY domain
PROSITE profilePS5081130.561108167IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGSLFIFSIL VLSLIANNLS SLCFFSFKCS TKSIVIAIAI AMELSSDHSL SLKPNPDDEH  60
RLSSQPTPEE APSKKRKVVQ KTVVTVKIGS KKAAIGIGKV KNEGPPPDFW SWRKYGQKPI  120
KGSPYPRGYY RCSTTKGCSA KKQVERCKTD GSMFIITYTS SHNHPGPNIS TLNLDQNQEE  180
IQPQPLDQDD DQDLVPNQGL EKQDQDHNND EKNSIISPGE EEEEEEEEIE VEEEEEEEES  240
LLAMEDEEKK GIEKVKECLE EPISSSCCHE LINLSATTNK SELENHDHFF DELEELPTPP  300
PFSSYFFDEI RISAAPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-211081671879Disease resistance protein RRS1
5w3x_D3e-211081671879Disease resistance protein RRS1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818741e-79LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132611e-79LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022948811.11e-113probable WRKY transcription factor 27 isoform X1
TrEMBLA0A1S3BZ102e-99A0A1S3BZ10_CUCME; probable WRKY transcription factor 69
STRINGXP_008454282.11e-100(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97083241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-31WRKY DNA-binding protein 35