PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla017323

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

SBP

Protein Properties

Length: 1009aa MW: 110808 Da PI: 6.3359

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla017323	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.8	2.4e-41	155	232	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C adls+ak+yhrrhkvCe+hska+++lv++++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk ++ Cla017323 155 VCQVEDCGADLSNAKDYHRRHKVCETHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKVNP 232 6**************************************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.0E-33	149	217	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.035	153	230	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.66E-38	154	235	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.1E-30	156	229	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	1.9E-7	748	907	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.14E-8	750	891	No hit	No description
SuperFamily	SSF48403	2.64E-8	775	891	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1009 aa Download sequence Send to blast
MEAGYGGEAC QLYGMGPMDL RAAVGKRNLE WDLNDWKWDG DLFIARPLNT VESDHLSRQL 60 FPIVSGIPLT NGGSSNSSSS CSDEANMGIE KGKREVEKRR RVTVIEDENL NDEARTLSLK 120 VGGNGSQIVE REAGSWEGTS GKKTKLAGGN SNRAVCQVED CGADLSNAKD YHRRHKVCET 180 HSKASNALVA NVMQRFCQQC SRFHVLQEFD EGKRSCRRRL AGHNKRRRKV NPDNVVNGNS 240 PPDEQTSSYL LLTLLRILAN LHSNGSNQTT DQDLLSHLIR SLACQSSEHG GKNLSGILHE 300 PQSLLNNGAL MGKSDLVSTF LSNGPQASLR SSKPHDTIPI SETPVQAIGR GGDTPAISSI 360 KPSTSNSPPA YSEIRDSTVG QCKMMNFDLN DAYVDSDDGM EDIERQTLPV HMGTSSLECP 420 SWVQQDSHQS SPPQTSGNSD SASAQSPSSS AGEAQSRTDR IILKLFGKAP NDFPHVLRAQ 480 VLDWLSHSPT EIESYIRPGC VVLTIYLRQT EASWDNLCHD LSTSFNRLLD VSDDAFWRTG 540 WVYVRVQHQI AIVYHGQVVV DTSLPLRNKN YCRITSVNPV AVSTSKKAMF SVKGINLTQP 600 TTRLLCAIEG KYLTQEASDG STESGEDDSR CVTFSCSIPV VYGRGFIEVE DDGFSSSSFP 660 FIVAEEDVCS EICTLQSALE LTETCSNSGE TAELEGRSNA MEFIHEIGWL FHRNQLKSRL 720 GHLDPNENLF SLPRFKWLME FSMDHDWCAV VKKLLDVLRD GNVDAGGHSS LNLALMEMGL 780 LHRAVRKNSR SLVELLLRYP SKVKDASSSE DSASIDGGAD SFLFRPNAIG PAGLTPLHIA 840 AGKDDSEDVL DALTNDPGMV GVEAWKSARD STGSTPEDYA RLRGHYSYIR LVQRKINKRS 900 AAGHVVLDIP SSLSDSSWNQ KPNTDLASSR FEIGRMELKP SQQHCKLCVR KPLGCGTPSS 960 ASLVYRPAML SMVAIAAVCV CVALLFKSSP EVLYVFRPFR WELLDYGTS

Sequence ? help Back to Top

Protein Sequence Length: 1009 aa Download sequence Send to blast

MEAGYGGEAC QLYGMGPMDL RAAVGKRNLE WDLNDWKWDG DLFIARPLNT VESDHLSRQL  60
FPIVSGIPLT NGGSSNSSSS CSDEANMGIE KGKREVEKRR RVTVIEDENL NDEARTLSLK  120
VGGNGSQIVE REAGSWEGTS GKKTKLAGGN SNRAVCQVED CGADLSNAKD YHRRHKVCET  180
HSKASNALVA NVMQRFCQQC SRFHVLQEFD EGKRSCRRRL AGHNKRRRKV NPDNVVNGNS  240
PPDEQTSSYL LLTLLRILAN LHSNGSNQTT DQDLLSHLIR SLACQSSEHG GKNLSGILHE  300
PQSLLNNGAL MGKSDLVSTF LSNGPQASLR SSKPHDTIPI SETPVQAIGR GGDTPAISSI  360
KPSTSNSPPA YSEIRDSTVG QCKMMNFDLN DAYVDSDDGM EDIERQTLPV HMGTSSLECP  420
SWVQQDSHQS SPPQTSGNSD SASAQSPSSS AGEAQSRTDR IILKLFGKAP NDFPHVLRAQ  480
VLDWLSHSPT EIESYIRPGC VVLTIYLRQT EASWDNLCHD LSTSFNRLLD VSDDAFWRTG  540
WVYVRVQHQI AIVYHGQVVV DTSLPLRNKN YCRITSVNPV AVSTSKKAMF SVKGINLTQP  600
TTRLLCAIEG KYLTQEASDG STESGEDDSR CVTFSCSIPV VYGRGFIEVE DDGFSSSSFP  660
FIVAEEDVCS EICTLQSALE LTETCSNSGE TAELEGRSNA MEFIHEIGWL FHRNQLKSRL  720
GHLDPNENLF SLPRFKWLME FSMDHDWCAV VKKLLDVLRD GNVDAGGHSS LNLALMEMGL  780
LHRAVRKNSR SLVELLLRYP SKVKDASSSE DSASIDGGAD SFLFRPNAIG PAGLTPLHIA  840
AGKDDSEDVL DALTNDPGMV GVEAWKSARD STGSTPEDYA RLRGHYSYIR LVQRKINKRS  900
AAGHVVLDIP SSLSDSSWNQ KPNTDLASSR FEIGRMELKP SQQHCKLCVR KPLGCGTPSS  960
ASLVYRPAML SMVAIAAVCV CVALLFKSSP EVLYVFRPFR WELLDYGTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	8e-32	149	229	4	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	101	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269\|PubMed:16554053}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681827	0.0	LN681827.1 Cucumis melo genomic scaffold, anchoredscaffold00018.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004148578.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
Swissprot	Q9S7P5	0.0	SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBL	A0A0A0LEQ2	0.0	A0A0A0LEQ2_CUCSA; Uncharacterized protein
STRING	XP_008447446.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jung S, et al. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. BMC Genomics, 2006. 7: p. 81 [PMID:16615871] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]