PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cla017267 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 317aa MW: 36267.9 Da PI: 5.2494 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.4 | 2.2e-15 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++ G g+W+ Iar g+ R++k+c++rw +yl Cla017267 20 KGLWSPEEDEKLMRYMLNNGQGCWSDIARNAGLQRCGKSCRLRWINYL 67 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.8 | 3.7e-16 | 73 | 117 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++E+el+v+++ + G++ W+ Ia++++ gRt++++k++w++ Cla017267 73 RGAFSPQEEELIVHLHSLIGNR-WSQIASRLP-GRTDNEIKNFWNST 117 89********************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-24 | 12 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.207 | 15 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.09E-28 | 18 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.6E-11 | 19 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-14 | 20 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.61E-9 | 23 | 67 | No hit | No description |
PROSITE profile | PS51294 | 25.059 | 68 | 122 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-26 | 71 | 123 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-15 | 72 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.7E-15 | 73 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.91E-10 | 75 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 317 aa Download sequence Send to blast |
MRKPEAVLGK ENVEKNKYRK GLWSPEEDEK LMRYMLNNGQ GCWSDIARNA GLQRCGKSCR 60 LRWINYLRPD LKRGAFSPQE EELIVHLHSL IGNRWSQIAS RLPGRTDNEI KNFWNSTLKK 120 RLKNNLSSSP YNHESSDPRL DMMFGGIMAM QEHDIMSMNM SMDSSSTSSS SSQLPFSATG 180 HNSFDSSSMP FLDNNFEMAS VAGATNGFLQ APLTDMGMGM GMRMEERFSY GNLEAQRSME 240 LERDVLCLPH EEMMNPPLMN NRSNFDQYLG TNEQNMNVEE MFGDMGSHGQ LQESLKMGNE 300 WDLESFMQDI SSFPHFL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-27 | 20 | 122 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00599 | PBM | Transfer from AT5G12870 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681835 | 0.0 | LN681835.1 Cucumis melo genomic scaffold, anchoredscaffold00064. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004149614.1 | 0.0 | PREDICTED: transcription factor MYB46-like | ||||
TrEMBL | A0A1S3CFJ0 | 0.0 | A0A1S3CFJ0_CUCME; transcription factor MYB46-like | ||||
STRING | XP_004149614.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF774 | 34 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G12870.1 | 2e-71 | myb domain protein 46 |