PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla017011

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

ZF-HD

Protein Properties

Length: 294aa MW: 31297.9 Da PI: 8.8106

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla017011	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	110.9	6.8e-35	60	117	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 +v+YkeClkNhAaslGgha+DGCgEfm+s++++ +++++lkCaACgCHRnFHRre+e+ Cla017011 60 QVVYKECLKNHAASLGGHALDGCGEFMSSPTATaTDPTSLKCAACGCHRNFHRREPED 117 799*************************999999****************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.5E-28	61	115	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	4.0E-19	61	123	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.9E-31	63	114	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.172	63	114	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.99E-19	191	259	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-30	193	260	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	6.8E-27	198	255	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MDLTPAISTA AATISTGGGA VKSPEFDTET PIKIQPTTKS HPFTNGVLKR HHHTAPPPPQ 60 VVYKECLKNH AASLGGHALD GCGEFMSSPT ATATDPTSLK CAACGCHRNF HRREPEDPIA 120 TPTTTHVIEY QPHHRHHPPP PPAAAHRSPS SASPPPISSS YYPSAPHMLL ALSGGLPENA 180 GSGGGFHHSI LTPSPNSRKR FRTKFTQNQK EKMYEFAEKV GWKIQKRDED MIQEFCSDVG 240 VDRGVLKVWM HNNKNTLGKK DGGRNINGSG GDGDGDDKIN GGGGGRAPAS SSSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	9e-23	197	256	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00387	DAP	Transfer from AT3G28920	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	0.0	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004147471.1	1e-168	PREDICTED: zinc-finger homeodomain protein 9-like
Swissprot	Q9LHF0	4e-82	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	A0A0A0LFA1	1e-166	A0A0A0LFA1_CUCSA; Uncharacterized protein
STRING	XP_004163533.1	1e-167	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1979	31	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	7e-74	homeobox protein 34

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]