PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla016993

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Dof

Protein Properties

Length: 524aa MW: 56704.2 Da PI: 5.0676

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla016993	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.7	7e-40	161	221	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Cla016993 161 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSA 221 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-31	158	218	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.0E-32	163	219	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.947	165	219	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	167	203	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence Send to blast
MSEPKDPAIK LFGKTIPLPE ASPATPQLPS SLPILTPGDD NTAAVDHDHD SSSSSLSPEA 60 NIDGDAEDLE VDKETIRGKS GGTKLEDGDG DGDGDGDGDG DGDGDGGLSV STEEFTNSDT 120 SAVRSENSKV LSGEESNPSS TTKTDEQNET SNSQEKTLKK PDKILPCPRC NSMDTKFCYY 180 NNYNVNQPRH FCKNCQRYWT AGGTMRNVPV GAGRRKNKSS ASHHRQIIVS ESLQHARTDV 240 SNGIHHSALK PNGNVLAFGS DAPLCESMAS ILNIADKTRQ NSTRNGFQKP EALKIPVAYE 300 NGENDDQSQE SAATPSFINN EEGKTGPQDQ VIHNCQGFLP PQIPFFPGAP WPYPWNSPQW 360 SSPVPPPTFY PPGIPMPFYP TAPFWGCTVP GAWTVPWVSQ PPSLSPVAQN HAPNSPTLGK 420 HSRDENVTKQ SDFGEDEQQK DNKAERCLWI PKTLRIDDPG EAAKSSIWAT LGIKNDKTDS 480 VSEGLFKAFQ SKKTNGKNHK AEASPVLQVN PAALSRSIKF HESS

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence Send to blast

MSEPKDPAIK LFGKTIPLPE ASPATPQLPS SLPILTPGDD NTAAVDHDHD SSSSSLSPEA  60
NIDGDAEDLE VDKETIRGKS GGTKLEDGDG DGDGDGDGDG DGDGDGGLSV STEEFTNSDT  120
SAVRSENSKV LSGEESNPSS TTKTDEQNET SNSQEKTLKK PDKILPCPRC NSMDTKFCYY  180
NNYNVNQPRH FCKNCQRYWT AGGTMRNVPV GAGRRKNKSS ASHHRQIIVS ESLQHARTDV  240
SNGIHHSALK PNGNVLAFGS DAPLCESMAS ILNIADKTRQ NSTRNGFQKP EALKIPVAYE  300
NGENDDQSQE SAATPSFINN EEGKTGPQDQ VIHNCQGFLP PQIPFFPGAP WPYPWNSPQW  360
SSPVPPPTFY PPGIPMPFYP TAPFWGCTVP GAWTVPWVSQ PPSLSPVAQN HAPNSPTLGK  420
HSRDENVTKQ SDFGEDEQQK DNKAERCLWI PKTLRIDDPG EAAKSSIWAT LGIKNDKTDS  480
VSEGLFKAFQ SKKTNGKNHK AEASPVLQVN PAALSRSIKF HESS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	0.0	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008443398.1	0.0	PREDICTED: cyclic dof factor 2
TrEMBL	A0A1S3B7G1	0.0	A0A1S3B7G1_CUCME; cyclic dof factor 2
STRING	XP_008443398.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-108	cycling DOF factor 2