PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla016935

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

G2-like

Protein Properties

Length: 290aa MW: 33070.7 Da PI: 6.6777

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla016935	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.9	8.2e-32	23	76	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv a+e+LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+ Cla016935 23 PRLRWTPELHHSFVLAIERLGGHQKATPKLVLQLMDVKGLTISHVKSHLQMYRS 76 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.4E-31	19	79	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.364	19	79	IPR017930	Myb domain
SuperFamily	SSF46689	3.4E-15	21	77	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-22	23	76	IPR006447	Myb domain, plants
Pfam	PF00249	8.4E-8	24	75	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MSSNNNSCGR NGSVRQYIRS KVPRLRWTPE LHHSFVLAIE RLGGHQKATP KLVLQLMDVK 60 GLTISHVKSH LQMYRSMRAD IGRQDRGSST LKRKLSNFDD GDDDDDGCVE EENVRVLGEE 120 VVKGGGITYR SRTIQTPASK RGRISSIKEE ERIISRNNGY YCYDNYYGER DGMENIKIKM 180 MGDSESDGVA VNESAMANDA FKMMKREEHE REDEEEKESK YFELSLSLSL QHHYHHSSSE 240 MSEAISSSSS KLDNSSNNNN YRDCWSWSYG REQQKIGVNL DLSMALCGTQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-18	24	78	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-18	24	78	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-18	24	78	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-18	24	78	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681904	7e-53	LN681904.1 Cucumis melo genomic scaffold, anchoredscaffold00053.
GenBank	LN713264	7e-53	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016902518.1	1e-130	PREDICTED: putative Myb family transcription factor At1g14600
TrEMBL	A0A1S4E2S3	1e-129	A0A1S4E2S3_CUCME; putative Myb family transcription factor At1g14600
STRING	XP_008460208.1	1e-126	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5539	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	6e-30	G2-like family protein