PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016918
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C3H
Protein Properties Length: 714aa    MW: 79436.1 Da    PI: 5.6042
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016918genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.4e-07121143427
                ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                ++C ff++ G C  GdrC F Hgp
  Cla016918 121 VPCIFFQK-GLCLKGDRCAFLHGP 143
                69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.3712958IPR000571Zinc finger, CCCH-type
SMARTSM003560.00313057IPR000571Zinc finger, CCCH-type
PfamPF156632.8E-113084No hitNo description
PROSITE profilePS5010311.466086IPR000571Zinc finger, CCCH-type
SMARTSM003560.216285IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5117143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.633117144IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-5118142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-5121143IPR000571Zinc finger, CCCH-type
PfamPF146080.024122142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MVGGGGPQVL EQPPQSLSQP PSAAEEEAIK RNTDCVYFLA SPLTCKKGTD CEYRHSEYAR  60
VNPRDCWFWL NGNCLNPKCS FRHPPLDGLV GTPHSTAPSS QIPSQTSAIP SAPVNSSKQA  120
VPCIFFQKGL CLKGDRCAFL HGPSTVPTNK IPQTAVNAQA GEPPSVKKVS GGTQRSSQEQ  180
KIPQGNFSKS IGASSVKLAM KDETVPSKIR NINEKSGPPA EVVDGGSRYK ATNSLPTLNE  240
CSLSRANRLQ QSHVIDDHGL QNGKDADEFL KESSPGFDVL VDDELRGSGY YGSEEQYGRT  300
RGHEGANMIS MSDYDISHSA DYKMMADVDH DVYNDVTDYD YDSRQGGQYG WDQRRTSSDK  360
LSLGSAQMER RLIPKSNSPE HVQNVDLRHR LNKQRRGNGL RSVINNENAA SRSEERNYRS  420
SRRDSHPSQE STVSNRLRGR IKLPRVPSPV RNSNLRPERD LNRGRPWGRL SPGRSQSLTH  480
QGSNRDEMKG RMEEDYNNER RTFNGVNSRR DRMDGTSNFA APKSLAELKG DKHVVSSKEQ  540
QTLGKRKGFD IGQSGGELSF EGPKSLSEIL KRKRQVKSGV DLPMNNAERE SSERSMERST  600
TPPLKQSGLS STVKQEANSL EELKSAPAET FVQEENIDVS QPLHTTIDHG IEAYDEALEE  660
DQEYEGDDQR DGEYEYEQVD DGEYNYEEGD NVDPEEYMED EDGDDFAKKI GVMS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819040.0LN681904.1 Cucumis melo genomic scaffold, anchoredscaffold00053.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008460229.10.0PREDICTED: zinc finger CCCH domain-containing protein 17
TrEMBLA0A1S3CCH60.0A0A1S3CCH6_CUCME; zinc finger CCCH domain-containing protein 17
STRINGXP_008460229.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92273137