PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016859
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRF
Protein Properties Length: 333aa    MW: 38169.2 Da    PI: 8.4454
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016859genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.18.9e-2578121144
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e
  Cla016859  78 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 121
                79***************************************987 PP

2QLQ59.78.1e-21842236
        QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
               +FTaaQ+q+L++Q+l++Ky++++ PvPp+Ll+ i+
  Cla016859  8 PFTAAQWQELEHQALIFKYMVSGIPVPPDLLFTIK 42
               8******************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.4E-12743IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.767843IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.4E-16841IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.9878122IPR014977WRC domain
PfamPF088791.1E-2079121IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MTSRNRFPFT AAQWQELEHQ ALIFKYMVSG IPVPPDLLFT IKRTSLSLDT PFISRLFPHQ  60
YPDVGWNYVQ MGSGRKIDPE PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGKNRSRKPV  120
EVLKTTTITT ALNSNPSSSS SLTHNSTHSF ASLTNSETHP HPHPFLYQHA SASSAHSSLL  180
PDYRRNRYVY GGKEEDVDEQ PFVREEQHSG NMRGFSASSM EDSWQLTPLT MSSSSSSSRY  240
KNGSALEGDY SSYLQLQSFG KYNEMQSKME REEPQKIMHH FFDEWSAKDR ESWVDLDDKS  300
SNNTGAVSAT RLSMSIPNHD FSSIFTSNKH NEN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022999222.10.0growth-regulating factor 5-like
TrEMBLA0A1S3CAW11e-173A0A1S3CAW1_CUCME; growth-regulating factor 6-like isoform X3
STRINGXP_008459738.11e-174(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.15e-57growth-regulating factor 5