PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla016859 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | GRF | ||||||||
Protein Properties | Length: 333aa MW: 38169.2 Da PI: 8.4454 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.1 | 8.9e-25 | 78 | 121 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e Cla016859 78 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 121 79***************************************987 PP | |||||||
2 | QLQ | 59.7 | 8.1e-21 | 8 | 42 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTaaQ+q+L++Q+l++Ky++++ PvPp+Ll+ i+ Cla016859 8 PFTAAQWQELEHQALIFKYMVSGIPVPPDLLFTIK 42 8******************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.4E-12 | 7 | 43 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.767 | 8 | 43 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.4E-16 | 8 | 41 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.98 | 78 | 122 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.1E-20 | 79 | 121 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MTSRNRFPFT AAQWQELEHQ ALIFKYMVSG IPVPPDLLFT IKRTSLSLDT PFISRLFPHQ 60 YPDVGWNYVQ MGSGRKIDPE PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGKNRSRKPV 120 EVLKTTTITT ALNSNPSSSS SLTHNSTHSF ASLTNSETHP HPHPFLYQHA SASSAHSSLL 180 PDYRRNRYVY GGKEEDVDEQ PFVREEQHSG NMRGFSASSM EDSWQLTPLT MSSSSSSSRY 240 KNGSALEGDY SSYLQLQSFG KYNEMQSKME REEPQKIMHH FFDEWSAKDR ESWVDLDDKS 300 SNNTGAVSAT RLSMSIPNHD FSSIFTSNKH NEN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022999222.1 | 0.0 | growth-regulating factor 5-like | ||||
TrEMBL | A0A1S3CAW1 | 1e-173 | A0A1S3CAW1_CUCME; growth-regulating factor 6-like isoform X3 | ||||
STRING | XP_008459738.1 | 1e-174 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4043 | 34 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 5e-57 | growth-regulating factor 5 |