PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016659
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ARR-B
Protein Properties Length: 673aa    MW: 73447 Da    PI: 5.366
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016659genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like47.93e-15210256145
    G2-like   1 kprlrW...tpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 
                kpr++W    ++LH++Fv av+ L G ekA+Pk+il+lm+v+gLt+e+
  Cla016659 210 KPRVNWydgDENLHRKFVAAVNFL-GYEKAVPKKILDLMNVEGLTREN 256
                789999444479************.********************987 PP
2Response_reg83.56.5e-28261341109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   +l vdD+p+ +++l+++l+k +y +v+++ ++ +al++l+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++ah++ e++++ +  Ga 
     Cla016659  26 ILAVDDDPICLKVLENLLRKCQY-HVTTTNQAVQALKMLRENKnrFDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAHSNTELVKKGVIHGAC 120
                   799********************.***************888888*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel +
     Cla016659 121 DYLLKPVRIEELKN 134
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.4E-1226668IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23004.5E-4323159No hitNo description
SuperFamilySSF521721.05E-3623150IPR011006CheY-like superfamily
SMARTSM004484.5E-3424136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011044.47325140IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2526134IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.49E-3027140No hitNo description
Gene3DG3DSA:1.10.10.609.0E-14208256IPR009057Homeodomain-like
SuperFamilySSF466894.12E-6208256IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-13210256IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MTVEVGRANL VGENEDMDQF PIGMRILAVD DDPICLKVLE NLLRKCQYHV TTTNQAVQAL  60
KMLRENKNRF DLVISDVNMP DMDGFKLLEL VGLEMDLPVI MLSAHSNTEL VKKGVIHGAC  120
DYLLKPVRIE ELKNIWQHVL RRKKPSAKNQ NKCTNGNNTS QSVEGAKGFP PAISTDNEKP  180
GKRQKDQDDD EEGGEEDSTY ENDDSSTQKK PRVNWYDGDE NLHRKFVAAV NFLGYEKAVP  240
KKILDLMNVE GLTRENEAQQ CNMMGAFGGK QTSFRPMASL NGFSMTGTGR LSNATFSPYP  300
SQEIVGQLNS TSGLSLHGIA SSGMFQSHKL NSSLNTFGKS HPAFLLANQP PHTFNGISTS  360
SDHIQLHRDK CTLSFKESNS INDASSFTVS TSFPDARMAV GSSSNYDFGS SHLLMLRGQK  420
QQIQGGGEFG GQSSLKVTLD NPEPLANGTG VSNILGHGES NKNWPGSIQL PKFSSNVSVT  480
GIYPPAGMPA TYLTISSAQP DNDNFPVGFP STSVDSSSQL DLRGDTQCYE ELIGSVVEAM  540
NGRSKQQWDA AKQDYYGNHS SIVRDSLVSG NSVVDPLNQM ANQNNAICLE NIGSSSTNQL  600
NDGAPTFIHN GAEISAMDTW MNYDGKILMD QTKLQSGFAN SSFNSLDELV NALSKQVSSN  660
ILHNLSIFPI PNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayz_A8e-14111333117Sensor kinase protein rcsC
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457369.10.0PREDICTED: two-component response regulator ARR12-like
TrEMBLA0A1S3C6130.0A0A1S3C613_CUCME; two-component response regulator ARR12-like
STRINGXP_008457369.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95634112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-98response regulator 12