PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016606
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GATA
Protein Properties Length: 330aa    MW: 35778.9 Da    PI: 5.2875
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016606genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.95.8e-18249282134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                Cs+C + kTp+WR gp+g ktLCnaCG++y++ +
  Cla016606 249 CSHCLVQKTPQWRTGPNGAKTLCNACGVRYKSGR 282
                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.7E-727326IPR016679Transcription factor, GATA, plant
SMARTSM004015.8E-16243293IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-14244306No hitNo description
PROSITE profilePS5011411.451247279IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.3E-14247280IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.79E-14248305No hitNo description
PfamPF003206.2E-16249282IPR000679Zinc finger, GATA-type
PROSITE patternPS003440249274IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEFLEAKALK SSLHWELAMK SAQQDALVEE VWCLNGANLV AGEDFEVDEF LNFSNGDLEH  60
GSALRVEDDD DDCEEFEKNR FSVSSNSNQS GGFPVVGEED SKSLLAVELA IPGDSVADLE  120
WVSQFVDDSC SEFSCAAVAF NRSEPEKKLA GTVISCLPTF FPVRPRTKRS RQSRQVKSAG  180
SSLNQSPSSS SSSTSSGVSS AAPSFIFSDA GENVDSLNVS GEPPKKQRKK SSSPSPAALL  240
PTGQIPRRCS HCLVQKTPQW RTGPNGAKTL CNACGVRYKS GRLFPEYRPA LSPTFCSGVH  300
SNSHRKVLEM RKTKEVPEPA TELAPMVPSY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819120.0LN681912.1 Cucumis melo genomic scaffold, anchoredscaffold00059.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004150140.10.0PREDICTED: GATA transcription factor 5-like
RefseqXP_011649263.10.0PREDICTED: GATA transcription factor 5-like
TrEMBLA0A0A0LLB30.0A0A0A0LLB3_CUCSA; GATA transcription factor
STRINGXP_004150140.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110834107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-44GATA transcription factor 5