PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016590
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TALE
Protein Properties Length: 681aa    MW: 74994.2 Da    PI: 6.5863
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016590genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.33e-094254621954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  Cla016590 425 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 462
                664559******************************88 PP
2BELL124.54.3e-40287358172
       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                e+q+lq+k +kLl +l+eVd+rY+qy++q+q+v+ssF+++ag+g++kpYt+lAl++iSrhFrcL+daia+q+
  Cla016590 287 EKQDLQNKLTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAIAGQV 358
                6899*****************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-58201356IPR006563POX domain
PfamPF075261.1E-50207355IPR006563POX domain
PROSITE profilePS5007112.212403466IPR001356Homeobox domain
SMARTSM003891.0E-9406470IPR001356Homeobox domain
CDDcd000866.45E-13406467No hitNo description
SuperFamilySSF466892.4E-17407474IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-29409472IPR009057Homeodomain-like
PfamPF059204.6E-18423462IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MATYYSSSNN ERDATPILYS RGSLLGSYEE TTVLPRNMMM HVNSGTYMDS LPSQAQNGCG  60
QITSVGAVGT TQQQQEFLSN LGGSQIAEHD FNTWRENRSE MLGTNSMRGP TNVLHGGHNL  120
QGQGLSLTLS TQIPSAIQIP SIPYRNSDMG LTSFLSPNPT NSGEDGCRNG ASRDEQMRNG  180
ENLPPNFQEL AKGELSQFSM SSIARTMPNS KYLKAAQQLL DEVVNVRKAL KRPNNERNQS  240
SHEHETRSAK NGDAGTKNDS SMLTASGASS NPQETGSNST CELSHAEKQD LQNKLTKLLY  300
MLDEVDRRYN QYYHQMQIVV SSFDVIAGCG ASKPYTALAL QTISRHFRCL RDAIAGQVRA  360
TRKSLGEHEN SGNDKGVGIT RLRYVDQQLR QQRALQQLGM IQQHAWRPQR GLPENSVSIL  420
RAWLFEHFLH PYPKDSDKIM LARQTGLTRS QVSNWFINAR VRLWKPMVEE MYKEEIGSVD  480
MDSISSSENA VKATKGDNKT FEDDKEEDLQ QSASSTATER CSAGDIIDLK SDQVSNLGNS  540
SSNRLASFQN GAHIEARNEL VKPSEELRPN VNNSSFFPDA IVHSQGESDR FMAAAAAYHM  600
SELGRFGTVG GVSLTLGLQH CEGGGMPMPA GTHHGFAAMR GDDMYNAAAS SLGETVHFEC  660
VNSGNPQPRF GASHLYHDFV V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16412469158Homeobox protein Meis1
4xrs_B2e-16412469158Homeobox protein Meis1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819120.0LN681912.1 Cucumis melo genomic scaffold, anchoredscaffold00059.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011649247.10.0PREDICTED: BEL1-like homeodomain protein 7
RefseqXP_011649248.10.0PREDICTED: BEL1-like homeodomain protein 7
TrEMBLA0A0A0LPC40.0A0A0A0LPC4_CUCSA; Uncharacterized protein
STRINGXP_004173415.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-118BEL1-like homeodomain 6