PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016562
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 271aa    MW: 31192.7 Da    PI: 9.8519
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016562genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.8e-10157204455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  Cla016562 157 SHSLAERARREKISERMKYLQNLVPGC----NKIAGKAGMLDEIINYVQSLQ 204
                8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.98E-8151208No hitNo description
SuperFamilySSF474592.36E-17151223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-19153223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.091153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-7157204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-9159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MTPSARLKRQ RPHGDCRSLS SVSTPASRVN HFEDLVAPGG WPELAKYEIS STKFRTNQTC  60
SLLTEANSVV EGEIAKKRKG KKKEMKWKGR DDNNNVEWGN GREKKMKGKV EEDEDDEDES  120
KITEERERWK CNSKASKEVQ KSDYVHVRAR RGQATDSHSL AERARREKIS ERMKYLQNLV  180
PGCNKIAGKA GMLDEIINYV QSLQQQVEFL SMKVAALNHR VDFINVDDFL AKQVRLIIIQ  240
LGRIANRSLS YINFVMFAIF YKCCFILNYL P
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819121e-63LN681912.1 Cucumis melo genomic scaffold, anchoredscaffold00059.
GenBankLN7132651e-63LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148863.21e-108PREDICTED: transcription factor bHLH78
TrEMBLA0A0A0LIZ71e-62A0A0A0LIZ7_CUCSA; Uncharacterized protein
STRINGXP_010088933.13e-55(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.15e-51cryptochrome-interacting basic-helix-loop-helix 1