PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016540
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 504aa    MW: 55199.8 Da    PI: 8.1469
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016540genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.37.6e-34231287259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                dDgynWrKYGqK vkgse+prsYY+Ct+ +Cpvkkk+ers  d++++ei+Y+g+Hnhe
  Cla016540 231 DDGYNWRKYGQKLVKGSEYPRSYYKCTHLNCPVKKKIERSP-DGQITEIIYKGQHNHE 287
                8****************************************.***************8 PP
2WRKY106.11.8e-33390448159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+vers++d k+v++tYeg+Hnh+
  Cla016540 390 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERSSTDSKAVVTTYEGKHNHD 448
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.996225289IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-29226289IPR003657WRKY domain
SuperFamilySSF1182902.48E-26227289IPR003657WRKY domain
SMARTSM007742.9E-37230288IPR003657WRKY domain
PfamPF031061.3E-25231287IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-36376450IPR003657WRKY domain
SuperFamilySSF1182905.23E-29382450IPR003657WRKY domain
PROSITE profilePS5081139.02385450IPR003657WRKY domain
SMARTSM007745.8E-39390449IPR003657WRKY domain
PfamPF031061.7E-25391448IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MAKKDDSARP PLQRPTITLP PRPSMEAFFA GGPTGVSPGP MTLLSSYFAD GAVDSPSFSQ  60
LLAGAMASPM AMGFFGTGST PNYYAKDGTA SELEFGMKQS KPLNLVVARP PLFSVPPGLS  120
PSGLLNSPGF YPPQSPFGMS HQQALAQVTA QAALANSHMH MQQAEYQHSS VPAPTEPLTR  180
DPSFSLDEAS QLAILPSTSD TKSLIAEPTE VSHPDRKYQP PPPHVSDKPA DDGYNWRKYG  240
QKLVKGSEYP RSYYKCTHLN CPVKKKIERS PDGQITEIIY KGQHNHEPPP ANKRARDNSE  300
PSGCTNSLMK PECGLQNQAG ILNKSSENVQ LGSSDSEERA DTEITDDRDE DEPNPKRQNI  360
DAGTSGVALS HKTLTEPKII VQTRSEVDLL DDGYRWRKYG QKVVKGNPNP RSYYKCTSAG  420
CNVRKHVERS STDSKAVVTT YEGKHNHDVP AARNSSHHTV NNTVPQIKPH KVVAQKHPLL  480
KEMEYGTNDQ RPAVLRLKEE QITV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-38231451878Probable WRKY transcription factor 4
2lex_A5e-38231451878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840290.0GU984029.1 Cucumis sativus WRKY protein (WRKY37) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267707.10.0probable WRKY transcription factor 3-like
SwissprotQ9ZQ701e-144WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLE7CEX80.0E7CEX8_CUCSA; WRKY protein
STRINGXP_004156159.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-131WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]