PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla016274

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

TCP

Protein Properties

Length: 286aa MW: 31374 Da PI: 9.3142

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla016274	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	108.7	8.5e-34	21	108	2	80
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaessss 80 +g+kdrhsk+ T++g+RdRRvRlsa++a+rf+d+qd+LG+d++sk+++WL+++ak ai++l ++ ++++ ++ + +ss+ Cla016274 21 TGRKDRHSKVFTAKGPRDRRVRLSAHTAIRFYDVQDRLGYDRPSKAVDWLIKKAKFAIDKLQELppyfpiangFTDPNPKTGETESSE 108 79**************************************************************988888886333333332222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.6E-31	21	101	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.964	23	81	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MKTSAAGEIV PVQGGHILRS TGRKDRHSKV FTAKGPRDRR VRLSAHTAIR FYDVQDRLGY 60 DRPSKAVDWL IKKAKFAIDK LQELPPYFPI ANGFTDPNPK TGETESSEFG SQLHLPSAVE 120 NFAPPLESLF PMSSATTSTN FQGYPVNFIL RPTDPARDLA LSLHNLHDSP LIPSEEDGNH 180 SPANDQRLIS DSIPAGYEGD EAGLWLQQPL LGQNSAAAFS QRVSVQASLG HSLPIRGWSN 240 QNRQLSVLGG RFDGSSELRT PSRIRGEGRE DGVVSGTHSS PPNYRR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	7e-21	28	81	1	54	Putative transcription factor PCF6
5zkt_B	7e-21	28	81	1	54	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022930891.1	1e-144	transcription factor TCP10-like
Swissprot	O82277	9e-43	TCP10_ARATH; Transcription factor TCP10
TrEMBL	A0A2C9UT11	4e-76	A0A2C9UT11_MANES; Uncharacterized protein
STRING	cassava4.1_011082m	6e-77	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1163	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	4e-45	TCP domain protein 10

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375]