PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016247
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bZIP
Protein Properties Length: 85aa    MW: 10010.2 Da    PI: 10.4635
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016247genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_174.71.3e-231476163
               XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1  1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
               e+elkr+rrkq+NRe+ArrsR+RK+ae++eL +++++L++eN +L++e+++++ e+++l se+
  Cla016247 14 ERELKRQRRKQSNRESARRSRLRKQAECDELSQRAEALKEENASLRSEVDRIRSEYEQLLSEN 76
               89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.2E-191073No hitNo description
SMARTSM003384.0E-221478IPR004827Basic-leucine zipper domain
PfamPF001703.0E-221476IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.5761679IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-121773No hitNo description
CDDcd147022.23E-111969No hitNo description
PROSITE patternPS0003602136IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MAMISSAFSH TKDERELKRQ RRKQSNRESA RRSRLRKQAE CDELSQRAEA LKEENASLRS  60
EVDRIRSEYE QLLSENASLK VMPKT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13036RRSRLRK
23037RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818241e-54LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132581e-54LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022158276.14e-38bZIP transcription factor 16 isoform X1
RefseqXP_022158284.14e-38bZIP transcription factor 16 isoform X1
RefseqXP_022158292.14e-38bZIP transcription factor 16 isoform X1
RefseqXP_022158301.14e-38bZIP transcription factor 16 isoform X1
RefseqXP_022158304.13e-38bZIP transcription factor 16 isoform X2
RefseqXP_022158312.13e-38bZIP transcription factor 16 isoform X2
SwissprotQ84LG26e-27BZP68_ARATH; bZIP transcription factor 68
TrEMBLA0A1S3CQ941e-36A0A1S3CQ94_CUCME; bZIP transcription factor 16 isoform X1
TrEMBLA0A1S4E5S91e-36A0A1S4E5S9_CUCME; bZIP transcription factor 16 isoform X2
STRINGXP_008466021.12e-37(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40173256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.12e-29basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]