PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016229
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 305aa    MW: 34245.4 Da    PI: 6.5097
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016229genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.9e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l++ v++ G g+W+  ++  g++R++k+c++rw +yl
        Cla016229 14 KGPWTPEEDEKLIEFVAKNGHGSWRNLPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding57.23.8e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+  +++++ +lG++ W++Ia++++ gRt++++k++w+++l
        Cla016229  67 RGKFSEEEESTIIKLHSLLGNR-WSKIASHLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.4E-26564IPR009057Homeodomain-like
PROSITE profilePS5129419.872961IPR017930Myb domain
SuperFamilySSF466898.07E-3211108IPR009057Homeodomain-like
SMARTSM007171.3E-151363IPR001005SANT/Myb domain
PfamPF002491.9E-171461IPR001005SANT/Myb domain
CDDcd001674.71E-121661No hitNo description
PROSITE profilePS5129428.07462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2765116IPR009057Homeodomain-like
SMARTSM007174.5E-1866114IPR001005SANT/Myb domain
PfamPF002494.9E-1767112IPR001005SANT/Myb domain
CDDcd001672.27E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGRSPCCDES GVKKGPWTPE EDEKLIEFVA KNGHGSWRNL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SEEEESTIIK LHSLLGNRWS KIASHLPGRT DNEIKNFWNT HLRKKLLQMG  120
IDPNTHKPRT DLNHFLNLSQ LFNNGIPNPL NSDHLKLQAE IAKLQLLQNL CQLLNPTTTI  180
PTTINNGLQN PNPSQFQAGF SPSFVSVVPG DLEDGDKINK ANLEEMRNFD YLLQAENYHP  240
LPPLISESPD GSASNVNQIE SIETNPLCFS TNSNSPAASS SIFDSLESLM NDDEANGSYW  300
NNILR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-30141167108B-MYB
1h8a_C1e-291411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818240.0LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008465998.11e-170PREDICTED: transcription factor MYB39
SwissprotQ9SBF33e-84MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A1S3CQ731e-169A0A1S3CQ73_CUCME; transcription factor MYB39
STRINGXP_004136397.10.0(Cucumis sativus)
STRINGXP_004165323.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.12e-82myb domain protein 93
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]