PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016175
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family LSD
Protein Properties Length: 154aa    MW: 16282.2 Da    PI: 8.323
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016175genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.21.4e-132953125
    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
               C+gCr+lL YP GA+sV+Ca+C++V
  Cla016175 29 CSGCRNLLLYPVGATSVCCAVCNAV 53
               ************************9 PP
2zf-LSD146.75.3e-156892125
    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
               CggC+tlL+Y rGA+sV+C++C+tV
  Cla016175 68 CGGCHTLLMYIRGATSVQCSCCHTV 92
               ************************9 PP
3zf-LSD141.71.8e-13106130125
    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                Cg+Cr lL+Y +GA+sV+Ca+C++V
  Cla016175 106 CGNCRMLLMYQYGARSVKCAVCNFV 130
                ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.107.1E-420127No hitNo description
TIGRFAMsTIGR010531.1E-122656IPR005735Zinc finger, LSD1-type
PfamPF069431.6E-102953IPR005735Zinc finger, LSD1-type
SuperFamilySSF486953.77E-529127IPR011031Multihaem cytochrome
TIGRFAMsTIGR010539.6E-156594IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-126892IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.0E-11103133IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-12106130IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MPPVPLAPYP TPPTPYTQPA NATQSQLVCS GCRNLLLYPV GATSVCCAVC NAVTAVPPPG  60
TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH TVNLALEANQ VAHVSCGNCR MLLMYQYGAR  120
SVKCAVCNFV TSVGEFGIIR KLRTSNRALI VLNS
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818246e-46LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132586e-46LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148490.13e-91PREDICTED: protein LOL1
RefseqXP_011652655.13e-91PREDICTED: protein LOL1
RefseqXP_011652656.13e-91PREDICTED: protein LOL1
RefseqXP_011652657.13e-91PREDICTED: protein LOL1
SwissprotQ93ZB13e-74LOL1_ARATH; Protein LOL1
TrEMBLA0A0A0LEE47e-90A0A0A0LEE4_CUCSA; Uncharacterized protein
STRINGXP_004168567.11e-90(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81873346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.35e-62lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]