PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016148
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ARR-B
Protein Properties Length: 517aa    MW: 58076.3 Da    PI: 6.6575
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016148genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.35.2e-26285338155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                k++++Wt+eLH +Fv+a+eq+ G+++A+P++ilelmkv+gLt+++v+SHLQkYR+
  Cla016148 285 KTKVDWTSELHGKFVQAIEQI-GIDHAIPSKILELMKVEGLTRHNVASHLQKYRM 338
                6799*****************.********************************8 PP
2Response_reg26.63.1e-10201261109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+ d +   ++ +r+ le+ +y +v +++d +eal  + +    +++ +l +   + d  e +k + +++ +lpii+ ++    +++  ++ +Ga 
     Cla016148  20 VLLLDRDSRSASEIRSKLEEMEY-VVYSCSDEKEALSAILNTPgnFHVAILEVCAKNHD--ESFKLLGTSK-DLPIIMTSDVHCLSTMMMCIALGAV 112
                   6777888888899999*******.***************777777***********977..6777786666.8*******9999************* PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   +fl Kp ++++l++
     Cla016148 113 EFLLKPLSEDKLRN 126
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.84E-1516133IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.7E-1516164No hitNo description
PROSITE profilePS5011022.74919132IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.4E-620127IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.85E-921132No hitNo description
Gene3DG3DSA:1.10.10.608.2E-26282341IPR009057Homeodomain-like
PROSITE profilePS5129413.016282341IPR017930Myb domain
SuperFamilySSF466891.49E-17283342IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-24285339IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MVCTVDDLQE WKDFPKGLRV LLLDRDSRSA SEIRSKLEEM EYVVYSCSDE KEALSAILNT  60
PGNFHVAILE VCAKNHDESF KLLGTSKDLP IIMTSDVHCL STMMMCIALG AVEFLLKPLS  120
EDKLRNIWQH VIHKPDEDSI ASLMQLQLEN EDKNGVPEDM EILSWIQDIV WEQPEGSGNS  180
QLNLGDQMNC SMETDCRDKD VQSKFLETTS HDLVCEGPLP EGQPQLSDKV TVKEDKNLEA  240
GLKRQRVTSI IPLQNKSGVK SSPLAAEHSI QGSDVNHSAG TKAKKTKVDW TSELHGKFVQ  300
AIEQIGIDHA IPSKILELMK VEGLTRHNVA SHLQKYRMQK KHIMQREENP RCTMQTNHLK  360
PIMAYPSYHP NCGISVSAVY PTWRQTNGHP ANFNHPPGYR HWPQPGIQPW NSYAGVRADA  420
WGCPVMLPSH TPYFSYPQHV SASHNMHTVN KSYGMPQGLF DLQPDEKVVD KIVKEAMRKP  480
WSPLPLGLKP PTESVLTELS KQGISTVPPR INGSKPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-16281343163ARR10-B
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU1792031e-173KU179203.1 Cucumis sativus cultivar Q30 two-component response regulator-like protein APRR2 mRNA, complete cds.
GenBankKU1792041e-173KU179204.1 Cucumis sativus cultivar W33 two-component response regulator-like protein APRR2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652667.10.0PREDICTED: two-component response regulator-like APRR2 isoform X4
TrEMBLA0A0A0LEG60.0A0A0A0LEG6_CUCSA; Two-component response regulator-like protein APRR2
STRINGXP_004148499.10.0(Cucumis sativus)
STRINGXP_004172463.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.63e-89ARR-B family protein