PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cla015874 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 503aa MW: 54888.4 Da PI: 6.4397 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.9 | 6e-10 | 421 | 478 | 5 | 62 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr++r NR +A rs +RK +i eLe kv++L++e ++L +l l+ + l+++ Cla015874 421 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQ 478 9********************************************9998877666665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.2E-18 | 417 | 481 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.737 | 419 | 482 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 8.9E-9 | 421 | 475 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.6E-11 | 421 | 472 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.3E-10 | 421 | 477 | No hit | No description |
CDD | cd14703 | 2.79E-25 | 422 | 471 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 503 aa Download sequence Send to blast |
MGDTEDARTD NLRNLQCSFG TSSSSALKHH FSMDQLKISQ MNCSQGRAQH FQSNFLGDNS 60 RRIGIPPCPN SPQIPPISPY SQIPVSRPMN QQSYNSVPTH SRSLSQPSFF SLDSLPPLSP 120 SPFRDSPSTS NSDQVSADTS MEDRDASSHS LLPPSPYTRA NSSKMGDALP PRKAHRRSNS 180 DIPFGLSSMI QSSPLLPFSG SGGLERSTSS KENAGIFKPA SQFVKREPSL EKSIDNNLEG 240 MGEKKSEGDT VDDLFSAYMN LDNIDLFNSS GTNDKNGHEN REDLDSRGSG TKTGGESSDN 300 EAESSVNESG DNSQVPGLNS SAEKREGIKR TAGGDIAPNN RHYRSISMDS FMGKLQFGDE 360 SPKMPPTPPG IRPGQLSSNN LVDGNSTPFS LEFGNGEFSG AELKKIMAND KLAEIALTDP 420 KRAKRILANR QSAARSKERK MRYISELEHK VQTLQTEATT LSAQLTLLQR DSVGLTNQNN 480 ELKFRLQAME QQAQLRDGID NFS |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681798 | 0.0 | LN681798.1 Cucumis melo genomic scaffold, anchoredscaffold00019. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008448029.1 | 0.0 | PREDICTED: probable transcription factor PosF21 | ||||
Refseq | XP_008448030.1 | 0.0 | PREDICTED: probable transcription factor PosF21 | ||||
TrEMBL | A0A1S3BIS8 | 0.0 | A0A1S3BIS8_CUCME; probable transcription factor PosF21 | ||||
STRING | XP_008448029.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2272 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38900.1 | 1e-120 | bZIP family protein |