PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015772
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NAC
Protein Properties Length: 279aa    MW: 32314.9 Da    PI: 6.6889
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015772genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM142.72.1e-4481343128
        NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelv 100
                pGfrFhPt+eel+++yLk+ v+gk+l++ + i  +++y+++Pw+Lp  ++ +e+ewyfF++rdkk     r+nr+tk+gyWkatg+d++++s    ++l+
  Cla015772   8 PGFRFHPTEEELLNFYLKHVVAGKRLQF-DPIGILNLYQHDPWELPGLARIGEREWYFFVPRDKKLGGLGRPNRTTKNGYWKATGSDRKIVSLsdPKRLI 106
                9**************************9.89***************8778899***************9*********************997667788* PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                gl+ktLvfy gra +g+ktdW+m+eyr+
  Cla015772 107 GLRKTLVFYLGRATRGRKTDWIMNEYRF 134
                **************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100551.2496152IPR003441NAC domain
SuperFamilySSF1019411.02E-537152IPR003441NAC domain
PfamPF023652.0E-258133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MTHETDLPGF RFHPTEEELL NFYLKHVVAG KRLQFDPIGI LNLYQHDPWE LPGLARIGER  60
EWYFFVPRDK KLGGLGRPNR TTKNGYWKAT GSDRKIVSLS DPKRLIGLRK TLVFYLGRAT  120
RGRKTDWIMN EYRFPDNSPL PKDMVLCKIY RKATSLKVLE QRAAMEEEDA KPFQASYSSP  180
ASPFETISFC SQQEGMVPST HEGFYKEVEV AAMVDVGQEE KEVDPKFSST SLQIPSELDK  240
LTELQVPKLD MDWSQDLFWT QFNSPWFQPL TPYASMLNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-43815217168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817981e-133LN681798.1 Cucumis melo genomic scaffold, anchoredscaffold00019.
GenBankLN7132551e-133LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008447882.10.0PREDICTED: protein FEZ-like
SwissprotQ10S659e-94NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A1S3BIF70.0A0A1S3BIF7_CUCME; protein FEZ-like
STRINGXP_008447882.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62143251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-109NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]