PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015706
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family CO-like
Protein Properties Length: 407aa    MW: 44427.3 Da    PI: 5.1892
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015706genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.88e-07444539
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
               +C+ +++++ + +C+++   lC +C  + H+       H++
  Cla015706  4 ICDFCGQQRSIVYCRSDAAALCLSCDRNVHSAnalsrrHSR 44
               7*****************************65677777766 PP
2CCT61.62.5e-21350393144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                R  a+lRYkeK+k RkFeKk+rY+sRK++A++R RvKGrFvk+ 
  Cla015706 350 RSDAVLRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAG 393
                889**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.883147IPR000315B-box-type zinc finger
CDDcd000212.51E-7447No hitNo description
SMARTSM003364.0E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501198.8454390IPR000315B-box-type zinc finger
CDDcd000210.005264776No hitNo description
PfamPF062034.1E-16350392IPR010402CCT domain
PROSITE profilePS5101715.219350392IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGYICDFCGQ QRSIVYCRSD AAALCLSCDR NVHSANALSR RHSRTLLCDR CHSQAAFVRC  60
PEENISLCQN CDYMGHSSSA SISSRKRQPI NCYSGCPTAA ELSSIWSFVL DLTSGSDACE  120
QELGLMSIAE NSAVNAWGPD DKAGQNVSGV DETNEFSSVD KSIWYGSSSM PHIMDQPITR  180
DATSPKLHYP GTKGPELEIE DDLYETLNMD EDSLNIENYE ELFGVSLSYS EELLENGGID  240
SLFRLKSLSA AKSGCPGAAA AEGASGGFVN NVMQPASSNA ASADSVMSSK TEPVLCYNNK  300
QEHSSLSFSG MTGESSAGEH PDCGASSMLL MGEPPWCSMT TESSFQSSNR SDAVLRYKEK  360
KKARKFEKKV RYASRKVRAD TRRRVKGRFV KAGEAYDYDP LSQTRSY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817930.0LN681793.1 Cucumis melo genomic scaffold, anchoredscaffold00066.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004144557.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-139COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A0A0K5270.0A0A0A0K527_CUCSA; Uncharacterized protein
STRINGXP_004171204.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43623353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-129CONSTANS-like 9