PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015673
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 435aa    MW: 47724.7 Da    PI: 6.1695
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015673genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY932.1e-29110167260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                +DgynWrKYGqK vkg+ f rsYYrCt+++C+vkk++er++ d+k+++++Y g+H+h+k
  Cla015673 110 EDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTH-DGKITDTVYFGQHDHPK 167
                7***************************************9.***************85 PP
2WRKY1061.9e-33282340159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ++Dgy+WrKYGqK vkg+++prsYYrC+s+gCpvkk+ver++ dpkvv +tYeg+H+h+
  Cla015673 282 VNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASYDPKVVLTTYEGQHDHD 340
                58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.3E-2697167IPR003657WRKY domain
PROSITE profilePS5081121.551104168IPR003657WRKY domain
SuperFamilySSF1182906.67E-24104167IPR003657WRKY domain
SMARTSM007742.7E-32109167IPR003657WRKY domain
PfamPF031068.6E-23110166IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.3E-35268342IPR003657WRKY domain
SuperFamilySSF1182905.23E-29274342IPR003657WRKY domain
PROSITE profilePS5081135.84277342IPR003657WRKY domain
SMARTSM007746.0E-38282341IPR003657WRKY domain
PfamPF031064.9E-26283339IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MVSSGDQLEN EVDSDQLEHE NSSESQPQTS QDDPGGTNAS KSDHKCTGAA SITLEEAVKQ  60
PEVTIEQVDR GEISNIVTEK VTHKPITAEQ NSHSDLKVCI TSTIREKVSE DGYNWRKYGQ  120
KLVKGNVFVR SYYRCTHPTC MVKKQLERTH DGKITDTVYF GQHDHPKAQP HIPVAVGVVT  180
MVEEKLDEHA SGNSQDKTSI APGQTPHQTE LADMRQPSSV MASDDVKDEA SKRSRINDEV  240
DSDDTPDLKR EKKRCNIDVT VADKSTVESR VVVQTPSEVD IVNDGYRWRK YGQKLVKGNP  300
NPRSYYRCSS PGCPVKKHVE RASYDPKVVL TTYEGQHDHD MPPTRTVTLN SVGSTAAHSD  360
ETKPKPVGSS IGHDTVVHAT KDSLNNSSSE GKLIEKNGKS NATEASDGIV LDMVVNPSPG  420
VASGQNKQLK VAIES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-38108343175WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840340.0GU984034.1 Cucumis sativus WRKY protein (WRKY49) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267610.10.0probable WRKY transcription factor 20-like
RefseqXP_011658539.10.0PREDICTED: probable WRKY transcription factor 20-like isoform X1
SwissprotQ9SI372e-87WRKY1_ARATH; WRKY transcription factor 1
TrEMBLE7CEY30.0E7CEY3_CUCSA; WRKY protein
STRINGXP_004144541.10.0(Cucumis sativus)
STRINGXP_004164058.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93583343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.21e-95zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]