PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015626
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TALE
Protein Properties Length: 342aa    MW: 38590.5 Da    PI: 6.9752
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015626genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.17e-092703042155
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                k +yps++++  LA+++gL+ +q+ +WF N+R ++
  Cla015626 270 KWPYPSESQKVALAESTGLDLKQINNWFINQRKRH 304
                569*****************************885 PP
2ELK39.51.2e-13224245122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELK qLlrKYsgyLgsLkqEF+
  Cla015626 224 ELKGQLLRKYSGYLGSLKQEFL 245
                9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.1E-1792136IPR005540KNOX1
PfamPF037907.7E-2195132IPR005540KNOX1
SMARTSM012562.2E-26139190IPR005541KNOX2
PfamPF037917.1E-22144188IPR005541KNOX2
SMARTSM011881.2E-7224245IPR005539ELK domain
PfamPF037892.1E-10224245IPR005539ELK domain
PROSITE profilePS5121311.174224244IPR005539ELK domain
PROSITE profilePS5007111.92244307IPR001356Homeobox domain
SuperFamilySSF466891.97E-19246321IPR009057Homeodomain-like
SMARTSM003891.4E-11246311IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.6E-28249309IPR009057Homeodomain-like
CDDcd000862.97E-11256308No hitNo description
PfamPF059205.6E-17264303IPR008422Homeobox KN domain
PROSITE patternPS000270282305IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEGGGSSGSS CSFMATCNST NNNNTNTPMM MMINSTNNPQ TLDNNNNNNN NNKMFLPLSW  60
SSTSSNNNAQ TQRVSAFVPQ SNTNNNDLLT TSTSKAKIMA HPLFPRLLAA YVNCQKVGAP  120
PEVVARLEQA CAVATGSCRA AGRGDDPALD QFMEAYCEML TKYEQELTKP FKEAMLFFSR  180
IESQLKTLAV SSDGFELVGQ NECSKEIEVD MNENYIDPQA EEKELKGQLL RKYSGYLGSL  240
KQEFLKKKKN GKLPKEARQQ LLDWWSRHYK WPYPSESQKV ALAESTGLDL KQINNWFINQ  300
RKRHWKPSED MQFVVMDAAH PHYYLDNVIC NPFSMDCSST LF
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817929e-90LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132559e-90LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455471.10.0PREDICTED: homeobox protein knotted-1-like LET6
SwissprotP466081e-126HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A1S3C0Z50.0A0A1S3C0Z5_CUCME; homeobox protein knotted-1-like LET6
STRINGXP_004163429.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20393480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-114KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]