PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla015458

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

bHLH

Protein Properties

Length: 217aa MW: 24145.8 Da PI: 6.6764

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla015458	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.3	0.00015	170	208	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +++ + +K + a++L +A+ YI+ Lq Cla015458 170 RKEKLVDRITALHQIVSPF-----GKTDTASVLSEAIGYIRFLQ 208 6677778899999999887.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.658	158	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-8	168	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.55E-5	168	212	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.3E-7	172	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MMAGNPNWWA MFPPSFTSFA DQPQSWSQLL LGDEDRVLNQ TQMSHYQPKK LENWEDQILN 60 NNNNNSPSSQ VLEAPNFVDI VKQEVSNNIR DHSLNILHPN SSTLNSSHHT NKFLDFSCNT 120 NNPDHSTNLS VGADPDHSSE SKNHSAPVGG ACKKARVHPS SSTQPPLKVR KEKLVDRITA 180 LHQIVSPFGK TDTASVLSEA IGYIRFLQGQ IEVVPII

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN683263	3e-39	LN683263.1 Cucumis melo genomic scaffold, unanchored_scaffold01459.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008465633.2	1e-103	PREDICTED: transcription factor bHLH68-like, partial
TrEMBL	A0A1S3CQT4	1e-101	A0A1S3CQT4_CUCME; transcription factor bHLH68-like
STRING	XP_004141839.1	8e-96	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1223	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	3e-29	bHLH family protein