PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla015453

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

HD-ZIP

Protein Properties

Length: 736aa MW: 82347.4 Da PI: 6.3266

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla015453	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61	1.8e-19	83	138	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ ++t eq++e+e lF+++++p++++r++L++klgL+ rq+k+WFqNrR++ k Cla015453 83 KKRKNRHTLEQIREMEMLFKESPHPDEKQRQQLSEKLGLSCRQIKFWFQNRRTQIK 138 6788899*********************************************9877 PP
2	START	204.1	5.7e-64	258	474	5	205
HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT..... CS START 5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv...dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg..... 88 +a +e+vk+ +++ep+Wv+s+ e +n+d+++++++ ++ +++ea+r++gvv+ +l++lv++++d+ qW+e+++ ka+t+ev+++g Cla015453 258 RAIEEVVKMGDSDEPLWVRSVetgrELLNYDVYMKELAAGNErgkREVEASRETGVVFVDLHRLVQSFMDVV-QWKEMFPsiisKASTMEVVCNGdgtnk 356 6889******************999******99888999***********************.*********************** PP .EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHH CS START 89 .galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvk 186 ga+qlm+aelq+l+p+ p R+ f+R+++ql+ ++wv++dvS+d + +ss+ R++++pSg++i+++s+gh+kvtwveh+++ + h ++r +v+ Cla015453 357 dGAVQLMYAELQMLTPILPpREIFFIRSCKQLSSDKWVVADVSIDKVGDHI-DSSSSRCRKRPSGCIIQDTSDGHCKVTWVEHWECHKIGLHTIYRTIVN 455 *************999*************************98.9******************************************* PP HHHHHHHHHHHHHTXXXXX CS START 187 sglaegaktwvatlqrqce 205 sgl++ga++w atlq++ce Cla015453 456 SGLIFGARHWKATLQSHCE 474 ****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-19	71	134	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.09E-18	72	139	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.556	80	140	IPR001356	Homeobox domain
SMART	SM00389	6.7E-18	82	144	IPR001356	Homeobox domain
Pfam	PF00046	7.2E-17	83	138	IPR001356	Homeobox domain
CDD	cd00086	8.85E-18	83	138	No hit	No description
PROSITE pattern	PS00027	0	115	138	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	36.561	245	478	IPR002913	START domain
SuperFamily	SSF55961	3.43E-29	248	474	No hit	No description
CDD	cd08875	2.30E-94	249	474	No hit	No description
SMART	SM00234	7.1E-58	254	475	IPR002913	START domain
Pfam	PF01852	1.3E-51	258	474	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	2.0E-6	306	462	IPR023393	START-like domain
SuperFamily	SSF55961	4.12E-10	518	722	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 736 aa Download sequence Send to blast
MAVVMSDDHP SRRLKILPSS PALSLTLAGV FGNAAAMDVE FDAPARRDDS YSDNSEPAGS 60 RSAEDLGVDP DDEDEDKLQG NTKKRKNRHT LEQIREMEML FKESPHPDEK QRQQLSEKLG 120 LSCRQIKFWF QNRRTQIKAI HERHENALLK GEMEKLREEN QAMREMISKS SCPKCCSSPN 180 SVDPIFTSSD QQQQQLVTEI ARLKAEVERL RTALDKYVPA GTSSGENNEE GIERRRNLEK 240 SKSILGMEKG RVMMIGKRAI EEVVKMGDSD EPLWVRSVET GRELLNYDVY MKELAAGNER 300 GKREVEASRE TGVVFVDLHR LVQSFMDVVQ WKEMFPSIIS KASTMEVVCN GDGTNKDGAV 360 QLMYAELQML TPILPPREIF FIRSCKQLSS DKWVVADVSI DKVGDHIDSS SSRCRKRPSG 420 CIIQDTSDGH CKVTWVEHWE CHKIGLHTIY RTIVNSGLIF GARHWKATLQ SHCEWQVFFM 480 ATNVPMKDST GITTVGGRKS VLRLAQRMAS SIYQAIGASS SHTWTKIQSK IGETIRIASR 540 KNLKNPQEPT GLILCAVASV WLPVSPKLLF EFLIDESRRP EWDVMLSGGQ AEMLANFAKG 600 QNRGNAVTIQ AIKSDETNTW ILQDSLTNEY ESTVVYAQVD MNSMKSVMAG FDPSNITTLP 660 TGFSILPDGH PTRPLVISSS KEERETEGGS LLTIASQILV SPSPTAETTS QSVDYVNNII 720 SHTLENIKAS LKGEDD

Sequence ? help Back to Top

Protein Sequence Length: 736 aa Download sequence Send to blast

MAVVMSDDHP SRRLKILPSS PALSLTLAGV FGNAAAMDVE FDAPARRDDS YSDNSEPAGS  60
RSAEDLGVDP DDEDEDKLQG NTKKRKNRHT LEQIREMEML FKESPHPDEK QRQQLSEKLG  120
LSCRQIKFWF QNRRTQIKAI HERHENALLK GEMEKLREEN QAMREMISKS SCPKCCSSPN  180
SVDPIFTSSD QQQQQLVTEI ARLKAEVERL RTALDKYVPA GTSSGENNEE GIERRRNLEK  240
SKSILGMEKG RVMMIGKRAI EEVVKMGDSD EPLWVRSVET GRELLNYDVY MKELAAGNER  300
GKREVEASRE TGVVFVDLHR LVQSFMDVVQ WKEMFPSIIS KASTMEVVCN GDGTNKDGAV  360
QLMYAELQML TPILPPREIF FIRSCKQLSS DKWVVADVSI DKVGDHIDSS SSRCRKRPSG  420
CIIQDTSDGH CKVTWVEHWE CHKIGLHTIY RTIVNSGLIF GARHWKATLQ SHCEWQVFFM  480
ATNVPMKDST GITTVGGRKS VLRLAQRMAS SIYQAIGASS SHTWTKIQSK IGETIRIASR  540
KNLKNPQEPT GLILCAVASV WLPVSPKLLF EFLIDESRRP EWDVMLSGGQ AEMLANFAKG  600
QNRGNAVTIQ AIKSDETNTW ILQDSLTNEY ESTVVYAQVD MNSMKSVMAG FDPSNITTLP  660
TGFSILPDGH PTRPLVISSS KEERETEGGS LLTIASQILV SPSPTAETTS QSVDYVNNII  720
SHTLENIKAS LKGEDD

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269\|PubMed:11844112}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by GEM. {ECO:0000269\|PubMed:17450124}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681805	1e-120	LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBank	LN713255	1e-120	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004141841.1	0.0	PREDICTED: homeobox-leucine zipper protein GLABRA 2
Swissprot	P46607	0.0	HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBL	A0A0A0K6N0	0.0	A0A0A0K6N0_CUCSA; Uncharacterized protein
STRING	XP_004166837.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4714	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79840.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Wu R,Citovsky V Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development. Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553 [PMID:28526410]