PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015376
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TALE
Protein Properties Length: 535aa    MW: 59799.2 Da    PI: 6.0355
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015376genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.99.4e-103553921954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   ++yp+ +e+ +LA+++gLt +qV +WF N R +
  Cla015376 355 FEHflHPYPKDSEKLKLARQTGLTRNQVANWFINARVR 392
                664459******************************88 PP
2BELL99.13.6e-32219290172
       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                erq+l++k +kLlsll eVd+rY+qy++qlq ++ssF++vag g+a  Yt+lA ++iS hFr L+dai  qi
  Cla015376 219 ERQDLKNKNSKLLSLLGEVDRRYRQYYQQLQYLASSFDMVAGRGAADFYTALAHQTISCHFRRLRDAINAQI 290
                799******************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.5E-31130288IPR006563POX domain
PfamPF075261.8E-37148286IPR006563POX domain
PROSITE profilePS5007112.438333396IPR001356Homeobox domain
CDDcd000864.21E-13336397No hitNo description
SMARTSM003891.5E-9336400IPR001356Homeobox domain
SuperFamilySSF466893.38E-17337403IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-27339402IPR009057Homeodomain-like
PfamPF059208.7E-17353392IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MLGDQKLGSS CQEQPLCSGN LMMFMNQDPS CRDYSEIFSG VSSNYVETVG DRSNVEMAFI  60
PPVVGILDDS NFQCQGVSLS LSTHSPSVVS MPSFPHQYQT PAMPSSFINN APPLIFEKRP  120
NLKPSINDAK NGMYIAVGSG YSTLNLVYIE AAQQLLDEMV SIREALKELK SKKLKASNGL  180
GVDSCRENDG GSNDLTGEMC GNVRQSPIAN PSGDLSPTER QDLKNKNSKL LSLLGEVDRR  240
YRQYYQQLQY LASSFDMVAG RGAADFYTAL AHQTISCHFR RLRDAINAQI EVTRRTLGEQ  300
DALHSGQEGI PRLRFVDQHL RQQRALQQLG VTPHSWRPQR GLPESSVSIL RAWLFEHFLH  360
PYPKDSEKLK LARQTGLTRN QVANWFINAR VRLWKPMVEE MYKEEFGDSN IDIKSSPENA  420
SKVSWNNSLF SEDKGGDEMH DSMKSAANNG ERVLYRPCAT DDMINSSNFS MGGGGDVSLA  480
LELKHCEGDE FGMFGNNNRM VGSVELEAQD FPCLEPERHH QCRLTSSNML HDFVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A9e-17342400563Homeobox protein Meis2
4xrm_B9e-17342400563Homeobox protein Meis2
4xrs_A8e-17342399158Homeobox protein Meis1
4xrs_B8e-17342399158Homeobox protein Meis1
5bng_A8e-17342400159Homeobox protein Meis2
5bng_B8e-17342400159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818040.0LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461100.10.0PREDICTED: BEL1-like homeodomain protein 7
SwissprotQ9FWS91e-104BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBLA0A1S3CDG80.0A0A1S3CDG8_CUCME; BEL1-like homeodomain protein 7
STRINGXP_008461100.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75410.26e-80BEL1-like homeodomain 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]