PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015223
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 405aa    MW: 44690.2 Da    PI: 7.5972
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015223genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.61.9e-12340385655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri +++ +L+el P      +k  s a++Le+AveYIk Lq
  Cla015223 340 SIAERMRRTRISERMKKLQELFPDM----DKQTSTADMLELAVEYIKGLQ 385
                689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.208334384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-14337398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.43E-11338389No hitNo description
Gene3DG3DSA:4.10.280.102.4E-13339395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-12340390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9340385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MKKYPDFMDS DSTNNHHSQQ QHNNSGGLMR YCSAPTSLFA SVVDGTEGFH SSNNGGGSRE  60
DYRFIRSSSP EVEVILSRFM ASCNGNFDSG SGETTVKQET GESVQQQNGF CNQSSSMVNT  120
NSVNSAGGAQ IGNSYGVLNS SDFDNSMQLQ LGARNCSNLF RQSSSPAGFF SHLTAENGNT  180
TREVEKFGTC NRKDVDSAYP STRIGNQMNI SGHSFGSSHM PPIAEEENKS IDVVSSSRHH  240
LQKAISGNQL HTDDFLNSSW DNSAMRDIKR GRDNNGHAFL TSIVLETQNA DSGNNIRGLA  300
HHLSLPISFN KDPVEKFLRF QDPVPHQIRA KRGCATHPRS IAERMRRTRI SERMKKLQEL  360
FPDMDKQTST ADMLELAVEY IKGLQRQVKT LTDTKAKCTC SCSSQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818040.0LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461268.10.0PREDICTED: transcription factor bHLH130-like isoform X2
TrEMBLA0A1S3CEB70.0A0A1S3CEB7_CUCME; transcription factor bHLH130-like isoform X2
STRINGXP_008461266.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40053359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-56bHLH family protein