PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla015154

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

WRKY

Protein Properties

Length: 281aa MW: 31889.4 Da PI: 7.0536

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla015154	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.6	1.2e-33	137	194	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCts C+vkk+ver+ +dp++v +tYeg+H+h+ Cla015154 137 EDGYRWRKYGQKAVKNSPFPRSYYRCTSVACNVKKRVERCLKDPSIVMTTYEGQHTHP 194 8********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.0E-35	121	196	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-29	128	196	IPR003657	WRKY domain
PROSITE profile	PS50811	30.894	131	196	IPR003657	WRKY domain
SMART	SM00774	1.0E-39	136	195	IPR003657	WRKY domain
Pfam	PF03106	3.4E-26	137	194	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MEEVAAANSL RYPFVDDDEN KSCLGFMELL SVDQNFSSQF DVFETLSSLS SSLISNPVVN 60 SENSEIWNQW PTTPTYSSST SSEILNGEPN QEGGEKQHQQ HTVKTNKQLK TKKTSPKKKD 120 QEQRFAFMTR SEVDHLEDGY RWRKYGQKAV KNSPFPRSYY RCTSVACNVK KRVERCLKDP 180 SIVMTTYEGQ HTHPSPIMAR STFFPPPISV TLYDDYPYQN GHSSNFISHP KGFVSSSFHQ 240 PCGIASSNRA THLLGATIDH GLLQDITPFQ YDELAWRNGP I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-26	126	196	7	77	Probable WRKY transcription factor 4
2lex_A	1e-26	126	196	7	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU984037	1e-124	GU984037.1 Cucumis sativus WRKY protein (WRKY52) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023549393.1	1e-128	probable WRKY transcription factor 23
Swissprot	O22900	3e-45	WRK23_ARATH; WRKY transcription factor 23
TrEMBL	A0A1S3BQY1	1e-109	A0A1S3BQY1_CUCME; probable WRKY transcription factor 23
STRING	XP_008451465.1	1e-109	(Cucumis melo)
STRING	XP_004135983.1	1e-109	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1002	34	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	4e-44	WRKY DNA-binding protein 71

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Prát T, et al. WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity. PLoS Genet., 2018. 14(1): p. e1007177 [PMID:29377885]