PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla015112

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

G2-like

Protein Properties

Length: 522aa MW: 57995.3 Da PI: 7.9738

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla015112	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	49.2	1.2e-15	90	146	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvk..gLtlehvkSHLQkYRl 55 k+rl WtpeLH+ F+e ++L k Pk+ile m k +t+e+v+SHLQk+Rl Cla015112 90 KQRLIWTPELHQYFLEIHNRLPNGSKVFPKKILEQMREKfpFVTRENVASHLQKHRL 146 79*****************9999*******765227************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.15E-13	88	150	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.2E-17	89	150	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.5E-14	90	147	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence Send to blast
MAHNSNHEDE GEGGFGGVEG APHYIVQSPN QSLQAVSHPI GFDASASANG NSVRISSGIA 60 DDSQVERTIS SNPKASKKKN GYHHRQGVKK QRLIWTPELH QYFLEIHNRL PNGSKVFPKK 120 ILEQMREKFP FVTRENVASH LQKHRLFLKK KMNKENSAKS SSNSVPLKVP KESNSQPIHN 180 NTTNSNPTNP NSQLILQSYF NSTNPNSQLL PPSHSNSTSP NSHLILQSHS NSTNPNSQLI 240 LQSHFNSTNP NSHLLLQSYP NSTNLLLPRH SNSTNPNSHL PQPKKPHIKP ETLLNHEVYL 300 HFDQTNNVSN QAMMQQQQPS LNMGPKNIYS NMINVCESQE NLHLALPIPI RQSSIAATTD 360 IALSINFCPT PISANQISKT DGNNNGNGIG FHPNTQYNYN SSGGLNNSNN DNFRGALPNC 420 DYNMNLNFDN LQVDGLLTND MYCLGSCSEA SDIFDYPSNF NAINDVQMVV KQGLQSIIYP 480 SENHMKDDST LQHCSGSYNN HSLPQTPGTH HLHLLLNYLC FL

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence Send to blast

MAHNSNHEDE GEGGFGGVEG APHYIVQSPN QSLQAVSHPI GFDASASANG NSVRISSGIA  60
DDSQVERTIS SNPKASKKKN GYHHRQGVKK QRLIWTPELH QYFLEIHNRL PNGSKVFPKK  120
ILEQMREKFP FVTRENVASH LQKHRLFLKK KMNKENSAKS SSNSVPLKVP KESNSQPIHN  180
NTTNSNPTNP NSQLILQSYF NSTNPNSQLL PPSHSNSTSP NSHLILQSHS NSTNPNSQLI  240
LQSHFNSTNP NSHLLLQSYP NSTNLLLPRH SNSTNPNSHL PQPKKPHIKP ETLLNHEVYL  300
HFDQTNNVSN QAMMQQQQPS LNMGPKNIYS NMINVCESQE NLHLALPIPI RQSSIAATTD  360
IALSINFCPT PISANQISKT DGNNNGNGIG FHPNTQYNYN SSGGLNNSNN DNFRGALPNC  420
DYNMNLNFDN LQVDGLLTND MYCLGSCSEA SDIFDYPSNF NAINDVQMVV KQGLQSIIYP  480
SENHMKDDST LQHCSGSYNN HSLPQTPGTH HLHLLLNYLC FL

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31214	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	2e-12	response regulator 2