PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015111
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ARR-B
Protein Properties Length: 583aa    MW: 65319 Da    PI: 5.5685
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015111genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like38.91.9e-12203260255
    G2-like   2 prlrWtpeLHerFveaveqLG.GsekAtPktilelmkvkg...LtlehvkSHLQkYRl 55 
                 r  Wt e H+ F+++++ +    ek +Pk+i + mk  g   +t+e+++SHLQk+R+
  Cla015111 203 GRFIWTDEYHQIFLDVIKDITlKMEKIVPKRIFNYMKNRGvphITRENIASHLQKHRS 260
                6999**************8652679***********86553338*************7 PP
2Response_reg43.81.4e-15171151100
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESE CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakd 96 
                   vl+vdD+ + +++l +al+k gy +v   +++e al++lk+k+ +D+i++ i+++++ +++l+++ + e  ++p+i++ ++ ++e a e +  Ga +
     Cla015111  17 VLVVDDDCAHLSALGEALTKFGY-QVVKLQNPEHALAILKRKKrFDIIVCGISISEIGAFNLIRTAEVEF-NIPVILMVSNLSNEVAFEGILSGAAQ 111
                   89*********************.9999***********77777*********************98877.9************************* PP

                   EEES CS
  Response_reg  97 flsK 100
                   +++K
     Cla015111 112 CVAK 115
                   **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23004.3E-1615139No hitNo description
SuperFamilySSF521721.41E-1515131IPR011006CheY-like superfamily
SMARTSM004481.7E-815127IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011018.7616131IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.6E-1017115IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.49E-1318127No hitNo description
Gene3DG3DSA:1.10.10.601.0E-14200264IPR009057Homeodomain-like
SuperFamilySSF466896.81E-12200264IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-12202260IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MVQFNISNKL YQFGFNVLVV DDDCAHLSAL GEALTKFGYQ VVKLQNPEHA LAILKRKKRF  60
DIIVCGISIS EIGAFNLIRT AEVEFNIPVI LMVSNLSNEV AFEGILSGAA QCVAKLPVLD  120
TQVLQYIWQH VVIRRRNEFF SCVYLPQMEP SSKVSPWKVV GETVSPTAYR GGLDYSNPKV  180
NLKIREESGE GFDHDHQDIS KKGRFIWTDE YHQIFLDVIK DITLKMEKIV PKRIFNYMKN  240
RGVPHITREN IASHLQKHRS NIKNLYNNGI DKSCDFPNSD VTKDLKLGKS CPSDDDQTLN  300
KTQNLASQDL SKQEQETPPT QPSNETLLFD QTMQDIDWNT LEVIPTCFKN NSTIWSNMNE  360
DSLEDHKIPA WDMEISDQPQ QVGQESNINN EEPDPSILSV NQIFDTNYGN IIGPHHDHPL  420
MTDFNQNLKN GLLNEYVYNS QNFESFENLT EDGFQALRGL RLALGLSNCA CACLSFLGLA  480
LGLSSYACAC LSFPGLALGL SSLARWKESQ AYVYGVSLAF PVNHHVEGTG LALGLFSYAC  540
ACLSFPGLAL SLSSLARWKE SQAYVYGVSL AFPVNHHVEG RSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.12e-31response regulator 1