PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015025
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRAS
Protein Properties Length: 570aa    MW: 64048.4 Da    PI: 4.6678
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015025genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS432.43.4e-1322015702374
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                ++ LlecA a+s++++e+a+a++++l+ ++s +gdp qR+aay++e+Laarl++s++ lykal+++e +   ss++laa+++++ev+P++kf++++aN a
  Cla015025 201 RQMLLECAFAISEENFEEARAMIEQLRGMVSVQGDPSQRIAAYMVEGLAARLLESGKCLYKALRCKEPP---SSDRLAAMQILFEVCPCFKFGFMAANCA 297
                689*****************************************************************9...9*************************** PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                I ea++ e+++H+iDfd+sqG+Q++ L+q La++p++pp+lR+Tgv++pes+      l+++g+rL+++A++l+vpfef++ + ++ +d+++++L+ +pg
  Cla015025 298 IIEAAKDEKKIHVIDFDVSQGTQYIKLIQMLAAQPGKPPHLRLTGVDDPESVqrPVGGLRHIGQRLEQLAKALRVPFEFRA-IPSNASDVTPSMLASRPG 396
                **************************************************99888899***********************.799*************** PP

       GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                Eal+Vn+++ lh+++desvs+ + rd++L++vksl+Pk+v+vveq++++n+++F+ rf+ea +yy+a+++sl+a+lpr+s++ri+vEr++l+++ivn+va
  Cla015025 397 EALIVNFAFLLHHMPDESVSTVNLRDRLLRMVKSLNPKLVTVVEQDMNTNTTPFFSRFVEAYNYYAAVYNSLDATLPRDSQDRINVERQCLAKDIVNIVA 496
                **************************************************************************************************** PP

       GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                ceg+er+er e ++kWr+r+++aGF++ ++s+++++ ++ l++++ ++ +++ ee g++ +gW++++Lv++SaWr
  Cla015025 497 CEGEERVERYEVAGKWRARMTMAGFTSCSMSKNVTDPIRKLIEEYCDR-FKMYEEMGTVHFGWEEKSLVVTSAWR 570
                **********************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.178174551IPR005202Transcription factor GRAS
PfamPF035141.2E-129201570IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MSLVRPSDPS PLSYGSRKLY SLKGTNNAPD LSTQRFGSEK HRTMYMNDTY CSESYEKYFL  60
DFPIEEPSIS GISTNSCHPN AWVDSLSPLC DSFTLFDACQ SNSDSACLES TSPDQLDFED  120
DQVRLKLQEL ERDLLGDPDA ADYDVEMLAN GQSMEIDSEW ANSIQDALLH DSPKESSSTD  180
SNFSTISSNK DASQISSQNP RQMLLECAFA ISEENFEEAR AMIEQLRGMV SVQGDPSQRI  240
AAYMVEGLAA RLLESGKCLY KALRCKEPPS SDRLAAMQIL FEVCPCFKFG FMAANCAIIE  300
AAKDEKKIHV IDFDVSQGTQ YIKLIQMLAA QPGKPPHLRL TGVDDPESVQ RPVGGLRHIG  360
QRLEQLAKAL RVPFEFRAIP SNASDVTPSM LASRPGEALI VNFAFLLHHM PDESVSTVNL  420
RDRLLRMVKS LNPKLVTVVE QDMNTNTTPF FSRFVEAYNY YAAVYNSLDA TLPRDSQDRI  480
NVERQCLAKD IVNIVACEGE ERVERYEVAG KWRARMTMAG FTSCSMSKNV TDPIRKLIEE  540
YCDRFKMYEE MGTVHFGWEE KSLVVTSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-6520656925378Protein SCARECROW
5b3h_A4e-6520656924377Protein SCARECROW
5b3h_D4e-6520656924377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817940.0LN681794.1 Cucumis melo genomic scaffold, anchoredscaffold00061.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004139646.10.0PREDICTED: scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A0A0K4D50.0A0A0A0K4D5_CUCSA; Uncharacterized protein
STRINGXP_004154460.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]