PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014991
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 612aa    MW: 67405.1 Da    PI: 6.2082
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014991genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.24.5e-16320366455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+k Lq
  Cla014991 320 VHNLSERRRRDRINEKMKALQELIPRC-----NKTDKASMLDEAIEYLKTLQ 366
                6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.24E-21314382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.165316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.01E-17319370No hitNo description
Gene3DG3DSA:4.10.280.105.6E-21320375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13320366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-18322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MTGRLRMNHC VPDFEMADDF SLPTFSNLTR PRKSSLPDDD VVELLWQNGQ VVTHSQNQRS  60
LRKSPPSKFD VSISQDQAAT REIRPSSQLE EPHELFMQED EMASWLNYPL VEDHNFCSDL  120
LFPAITAPLC ANPQPDVRPS ATATLTLTPR PPIPPCRRPE VQTSVQFSRN KATVESEPSN  180
SKVMVRESTV VDSCDTPSVG PESRASEMAR RKLAEVVNGG GVRYEVAGGG DGVRGASVGG  240
DGIGEKEMMT CEMTVTSSPG GSSASAEPAC PKLAADDRKR KGRAVDDTEC QSEDVEYESA  300
DPKKQLRGST SMKRSRAAEV HNLSERRRRD RINEKMKALQ ELIPRCNKTD KASMLDEAIE  360
YLKTLQLQVQ MMSMGCGMMP MMFPGVQQYL PPPMGMGMGM GMGMGMEMGM NRPMMQFHNF  420
LAGSNLPMQA GAAAAAHLGP RFPLPAFAMP PVPGNDPSRA QATNNQPDPM ANSVGTQNTT  480
PPSVLGFPDS YQQFLSSNQM QFQMTQPLQN QQPVQLNTSR PCTSRGPENL ENHQSDCDRK  540
ESRVTDGHGE SIAFTRNYCV AFRRGRVQDD DADRSNLVWS IVVVVIGRHQ SIPNSNSRAI  600
SMFFSWTMVS TA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324329ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817930.0LN681793.1 Cucumis melo genomic scaffold, anchoredscaffold00066.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659164.10.0PREDICTED: transcription factor PIF1
RefseqXP_011659165.10.0PREDICTED: transcription factor PIF1
TrEMBLA0A0A0K5310.0A0A0A0K531_CUCSA; Uncharacterized protein
STRINGXP_008461998.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.33e-62phytochrome interacting factor 3-like 5