PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla014880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | NAC | ||||||||
Protein Properties | Length: 155aa MW: 17549.7 Da PI: 5.8484 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 40.7 | 7.5e-13 | 5 | 37 | 96 | 128 |
NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +ge+vg++ktLvfy++rap+g kt W+mhe+r+ Cla014880 5 RGEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRI 37 5789***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 22.855 | 1 | 56 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.11E-19 | 5 | 56 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-5 | 9 | 37 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MDPTRGEVVG MRKTLVFYRN RAPNGIKTGW IMHEFRIETP HMPPKEDWVL CRVFHKTKPD 60 QDITETTTAH TASHFPFDAV MAAAAAAGSS SYHSLPNHVE FPPGNDSNGL LPWDINMEET 120 AFRSYGVGDS NSQEMKYEII DNTIQNAFPF NYFVP |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681802 | 2e-52 | LN681802.1 Cucumis melo genomic scaffold, anchoredscaffold00046. | |||
GenBank | LN713255 | 2e-52 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004149326.1 | 2e-80 | PREDICTED: protein CUP-SHAPED COTYLEDON 3-like | ||||
TrEMBL | A0A1S3C7P3 | 3e-71 | A0A1S3C7P3_CUCME; NAC domain-containing protein 21/22-like | ||||
STRING | XP_004164049.1 | 2e-81 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4381 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 5e-29 | NAC domain containing protein 74 |