PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014831
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 148aa    MW: 16395.8 Da    PI: 5.9858
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014831genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-201869256
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
               +y+G+r+++ +g+++AeIrdps ng  +r +lg+f+taeeAa+a+++a+ +++g+
  Cla014831 18 RYRGIRRRP-WGKFAAEIRDPSRNG--ARLWLGTFDTAEEAARAYDQAAYAFRGH 69
               69*******.**********98887..*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.86E-261877No hitNo description
Gene3DG3DSA:3.30.730.101.2E-311878IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-231877IPR016177DNA-binding domain
PfamPF008471.8E-141869IPR001471AP2/ERF domain
PROSITE profilePS5103225.0271876IPR001471AP2/ERF domain
SMARTSM003803.0E-361882IPR001471AP2/ERF domain
PRINTSPR003671.2E-111930IPR001471AP2/ERF domain
PRINTSPR003671.2E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MEGKRTGNEG KRSTNEGRYR GIRRRPWGKF AAEIRDPSRN GARLWLGTFD TAEEAARAYD  60
QAAYAFRGHL AILNFPNEYQ SGNPNFAAAF GSSMAAGSSS ATTISFAGNY NDNNASRRSG  120
EVIELEYLDN ELLEELLQAE GEGYNRKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-3216831279Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818031e-166LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBankLN7132551e-166LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022959671.16e-79ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC51e-41ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1S3BR439e-70A0A1S3BR43_CUCME; ethylene-responsive transcription factor ERF098-like
STRINGXP_008451255.12e-70(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-27ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]