PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla014830

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

ERF

Protein Properties

Length: 138aa MW: 15669.4 Da PI: 4.8049

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla014830	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.6	8.4e-20	28	78	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd + r r++lg+f taeeAa+a+++a+ +++g Cla014830 28 KYRGVRRRP-WGKFAAEIRDSRR---RgVRIWLGTFETAEEAARAYDRAAFRMRG 78 8******.******433...34***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.37E-29	28	87	No hit	No description
Pfam	PF00847	5.2E-15	28	78	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.131	28	86	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	8.0E-32	28	88	IPR001471	AP2/ERF domain
SMART	SM00380	3.2E-36	28	92	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.19E-24	28	87	IPR016177	DNA-binding domain
PRINTS	PR00367	8.1E-12	29	40	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.1E-12	52	68	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MEDRHQRALE INGGGGGGGG GGGDMCVKYR GVRRRPWGKF AAEIRDSRRR GVRIWLGTFE 60 TAEEAARAYD RAAFRMRGQL ATLNFPEEYP LMNVSSLESQ SSSLQNDETE RKEEAVFEFE 120 CLDEKLLDEL LDFDKETK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-33	18	126	4	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023733438.1	4e-44	ethylene-responsive transcription factor ERF096-like
Swissprot	Q9LTC5	7e-38	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A2J6KGH7	8e-43	A0A2J6KGH7_LACSA; Uncharacterized protein
STRING	XP_010039174.1	3e-39	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF270	33	215

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23220.1	2e-20	ERF family protein

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]