PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014822
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 690aa    MW: 76046.2 Da    PI: 6.2366
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014822genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.000545225591355
                HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                R+ i +++ eLrel+P+ a      K s  + Le++++++  Lq
  Cla014822 522 RQLIQDRIKELRELVPNgA------KCSIDSLLERTIKHMLFLQ 559
                67799************77......7777779999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.8E-376167IPR025610Transcription factor MYC/MYB N-terminal
Gene3DG3DSA:3.30.450.408.1E-483131IPR029016GAF domain-like
CDDcd000830.00424503559No hitNo description
PROSITE profilePS5088811.211509558IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-4522564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MGTIDLHQIL KSFCCNSEWK YAVFWKLKHR ARMVLTWEDG YYDNSEQHEP PESKFYRKTL  60
ETFHDGHYSH DPLGLAVAKM SYHVYSLGEG IVGQVAVTGK HQWITADEQI PNFSSTLEYC  120
DGWQTQFSAG IKTIVVVAVV PHGVLQLGSL DKVTEDVNLV ARIRNVFLTL QEPSAGNIKP  180
MHSCKSSGYV ADIPSRSLAT EKTEDGSVSK NVGIELSGSG GIETLKTKPD AINVESFKSQ  240
VRLLDDRTCG GEPSGCKDTA VGLKQKISVR PQNSAMDMVN ICGNLLPAEK IMTNDAYFPM  300
NPHASVCDGV NHNGIFSRTN LTEMYLQNDM EASETIDMYP SNQSLKFPAG YELHEVLGPA  360
FLKDALYLDW QTEYVFGGKA FELSEGMSVS QLTSGLPTER LLEAVVADVC HSGSDVKSDT  420
SLCKSGQSLL TTERIPEPST KVTTSACSEG YSMGQSQTSF IGEDIQNSLS SSGVCGVMSP  480
KGFSSTYSGT GSEHLDKSSE PAKNSKRRAR PGESSRPRPR DRQLIQDRIK ELRELVPNGA  540
KCSIDSLLER TIKHMLFLQG ITKHADKLTK CANMKLHQKE NGMLGTSNTD QGSSWAVEVG  600
GQLKVCSIIV ENLNKNGQIL VEMLCEECSH FLEIAEAIRS LGLTILKGIT EAHGEKTWIC  660
FVVEGENNRN IHRMDILWSL VQILQRSNTM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818030.0LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659263.10.0PREDICTED: transcription factor bHLH155 isoform X1
TrEMBLA0A0A0K7510.0A0A0A0K751_CUCSA; Uncharacterized protein
STRINGXP_004161538.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50272022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.11e-175conserved peptide upstream open reading frame 7