PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014818
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 356aa    MW: 39557.2 Da    PI: 9.9411
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014818genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.32.5e-31290347359
                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+
  Cla014818 290 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 347
                99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.8E-7268286IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.8E-33276348IPR003657WRKY domain
PROSITE profilePS5081130.067283349IPR003657WRKY domain
SuperFamilySSF1182903.79E-27286348IPR003657WRKY domain
SMARTSM007742.0E-38288348IPR003657WRKY domain
PfamPF031063.0E-27290347IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MMEEVEEANR EAVESCHKVL NLLTVASSSQ DQLKLRSRLM AETGDAVFKF RKVLCLLDSS  60
GLGHARVRKK KVKNFLFNSS SSPFPLPQSL FLETSSPNCR MDLLQGRNLQ MGPLCLGNPS  120
LELNSNAKSC STQQIQSQSA ALYHHHHHHH LLQNRVLLNN NPNPNPPQPE MMYLRSNNGI  180
NLNFDSSSCT QHTMSSTRSF ISSLSIDGSV ASLDGSAFHL IGAPRSLPIR IRILRGSAVG  240
EGKMGVLNVE AVGDVTAQKR GWEAVILKHR VKRSIKVPAI SNKLADIPPD DYSWRKYGQK  300
PIKGSPHPRG YYKCSSMRGC PARKHVERCL EEPSMLIVTY EGEHNHPRIP SQPANT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20281350775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840360.0GU984036.1 Cucumis sativus WRKY protein (WRKY51) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451288.10.0PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 21
SwissprotQ93WU61e-84WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A1S3BQJ00.0A0A1S3BQJ0_CUCME; LOW QUALITY PROTEIN: probable WRKY transcription factor 21
STRINGXP_008451288.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.18e-64WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]