PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla014685

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

HB-other

Protein Properties

Length: 972aa MW: 107787 Da PI: 9.393

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla014685	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18.1	4.6e-06	69	125	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + +s++e +e+++ g++ +qV+ +F +R + +k Cla014685 69 KRPRDLLNPKAVKYMQTVFSIKDALSKKESREISALFGVKVTQVRGFFNSQRSRVRK 125 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.313	66	126	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.67E-5	68	128	IPR009057	Homeodomain-like
SMART	SM00389	8.1E-4	68	130	IPR001356	Homeobox domain
CDD	cd00086	0.00408	69	125	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.8E-5	69	137	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 972 aa Download sequence Send to blast
MEVLKDDFSN LEIGTSVDSF QKFLDSQKDL FRSQVDQLQT IVVTQCKLTG VNPLSQEMAA 60 GALSITIGKR PRDLLNPKAV KYMQTVFSIK DALSKKESRE ISALFGVKVT QVRGFFNSQR 120 SRVRKLVRVS REKSIQSNSC KQLEVGGIAT NNDPSMPIDA VPLNSDAVVP LNADAPIPLN 180 SESPVPLNFD MPVPLNTIEP SNVDNGPSCS TQDRELCGID GVDKHFVQTI FSMMQKEETF 240 SGQVKLMEWI LQIQNSSVLC WFLTKGGAII LATWLSQAAA EEQTSLLHVI LEENFVTSNV 300 NVDNMRKPES HQTLKLLPAS SDDLNRKNVL GFRERRKVQM VEQPDQKIAG RNSQAPRTSP 360 ASQGRPMSTD DIQKAKMRAQ FMQSKYGKTG SSNGRSNVKS ENVNKPLHLV SGVSSPASKV 420 SVLPKFEDQK KAVALFPKFS NKVETPLHSK IEMDFKDSLG EKCKRVQIQW RKPPEMKLND 480 LWRVGGGENS KEAGFQKNRN SREKETFYQT ILDIPSNPKE PWDLEMDYDD SLTPEILTEQ 540 LPDNESSEAE VRNHVVDAAV SSEVLSSQDL KPNAAEPDLE LLAVLLKNPE LVYALTSSQA 600 GNLPTEETVK LLDMIKTGGA SNLGGVRMEK TVEKVEVSLP SPTPSSNAGT SGWKPAVLRN 660 PFSQRDSIAE SRVALSSPPV DTSSIAASRI PANNVTSNHQ HAAMPPVSHQ HPASVSQFSH 720 PQTMINGRQS HHVVHSHQHQ QGVVNSPSTL NVQLPNSETA LASRSFPITN QPLVNRLTAA 780 ASSVRIEGRN IVKPVSFASN TPERIPISFQ SPPSPTPTQM PPIQQQRQQV QLQPFRSEHP 840 HHQTRVNISL PPAEKSAPSL GCWRGRQQDI GSHYNSGANQ NNDSKLVGGS MAAVRGGHSW 900 GRNEFESWSP ENSPVRTQEY NRPDKSFTEP RINSGRSYGP ADQQQQRQRS PYGYREQNRH 960 GNSNRRWRDR QY

Sequence ? help Back to Top

Protein Sequence Length: 972 aa Download sequence Send to blast

MEVLKDDFSN LEIGTSVDSF QKFLDSQKDL FRSQVDQLQT IVVTQCKLTG VNPLSQEMAA  60
GALSITIGKR PRDLLNPKAV KYMQTVFSIK DALSKKESRE ISALFGVKVT QVRGFFNSQR  120
SRVRKLVRVS REKSIQSNSC KQLEVGGIAT NNDPSMPIDA VPLNSDAVVP LNADAPIPLN  180
SESPVPLNFD MPVPLNTIEP SNVDNGPSCS TQDRELCGID GVDKHFVQTI FSMMQKEETF  240
SGQVKLMEWI LQIQNSSVLC WFLTKGGAII LATWLSQAAA EEQTSLLHVI LEENFVTSNV  300
NVDNMRKPES HQTLKLLPAS SDDLNRKNVL GFRERRKVQM VEQPDQKIAG RNSQAPRTSP  360
ASQGRPMSTD DIQKAKMRAQ FMQSKYGKTG SSNGRSNVKS ENVNKPLHLV SGVSSPASKV  420
SVLPKFEDQK KAVALFPKFS NKVETPLHSK IEMDFKDSLG EKCKRVQIQW RKPPEMKLND  480
LWRVGGGENS KEAGFQKNRN SREKETFYQT ILDIPSNPKE PWDLEMDYDD SLTPEILTEQ  540
LPDNESSEAE VRNHVVDAAV SSEVLSSQDL KPNAAEPDLE LLAVLLKNPE LVYALTSSQA  600
GNLPTEETVK LLDMIKTGGA SNLGGVRMEK TVEKVEVSLP SPTPSSNAGT SGWKPAVLRN  660
PFSQRDSIAE SRVALSSPPV DTSSIAASRI PANNVTSNHQ HAAMPPVSHQ HPASVSQFSH  720
PQTMINGRQS HHVVHSHQHQ QGVVNSPSTL NVQLPNSETA LASRSFPITN QPLVNRLTAA  780
ASSVRIEGRN IVKPVSFASN TPERIPISFQ SPPSPTPTQM PPIQQQRQQV QLQPFRSEHP  840
HHQTRVNISL PPAEKSAPSL GCWRGRQQDI GSHYNSGANQ NNDSKLVGGS MAAVRGGHSW  900
GRNEFESWSP ENSPVRTQEY NRPDKSFTEP RINSGRSYGP ADQQQQRQRS PYGYREQNRH  960
GNSNRRWRDR QY

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681803	0.0	LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011659347.1	0.0	PREDICTED: homeobox protein LUMINIDEPENDENS
Refseq	XP_023548067.1	0.0	homeobox protein LUMINIDEPENDENS-like
Swissprot	Q38796	4e-89	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A0A0K948	0.0	A0A0A0K948_CUCSA; Uncharacterized protein
STRING	XP_004136181.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9809	29	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	5e-83	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]