PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla014546 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | GATA | ||||||||
Protein Properties | Length: 291aa MW: 31978.5 Da PI: 9.0045 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.2 | 1.1e-18 | 212 | 246 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l Cla014546 212 CSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRL 246 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 2.95E-14 | 205 | 268 | No hit | No description |
SMART | SM00401 | 2.4E-16 | 206 | 260 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.807 | 206 | 242 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.2E-14 | 210 | 244 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.09E-14 | 211 | 259 | No hit | No description |
Pfam | PF00320 | 1.6E-16 | 212 | 246 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 212 | 237 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MLSPPMMFSS TNSSICLIMM NFFKTKPLMM IHNPYLSLSI SISPPQIHHN SIVSDLPSFS 60 STELTVPADD LADLEWLSHF VEDSFSGFSP TFPSPGISSL KKSSKEAAAV EEQLEDDGPV 120 SPPDPCFKTP IPVKARSKRT RTTGRVWCLG SPSLTESSSC STTSSSSSSP ASPWLIISDR 180 FEPEIPVSKK PRRKSPSEKS KTTIGAQPPR RCSHCGVQKT PQWRTGPLGA KTLCNACGVR 240 FKSGRLLPEY RPACSPTFSS ELHSNHHRKV LEMRRKKEVA APAEFLTVEE N |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008465634.1 | 1e-139 | PREDICTED: GATA transcription factor 5-like | ||||
Swissprot | Q9FH57 | 8e-67 | GATA5_ARATH; GATA transcription factor 5 | ||||
TrEMBL | A0A1S3CPB9 | 1e-137 | A0A1S3CPB9_CUCME; GATA transcription factor | ||||
STRING | XP_008465634.1 | 1e-138 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1108 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 8e-60 | GATA transcription factor 5 |